RNA id: TCONS_00055789


Basic Information

Item Value
RNA id TCONS_00055789
length 1060
RNA type mRNA
GC content 0.49
exon number 5
gene id XLOC_028785
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 23886726 ~ 24031924 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAGCAACCTCCTCCAGTAACCTAGGAGCGTTCAGTGGTATTCAGCAAATGGCAGGTTCCACAGCAAACTCCAGCGCTGCCATGGGTTCCCTGGGTTCTCTGGGGACACTGCAGGGTCTGGCCGGGGCCACCGTGGGCCTCAATAACATTAATGCACTAGCAGGTAGCGTCAACAGTATGGCGGCTTTGAATGGCGGGCTGGGCAGCACAGGTCTGAGTAACGGGTCGGCCGGGCCTATGGACGCTCTCACACAGGCCTACTCAGGGATCCAACAGTACGCGGCTGCCGCCCTGCCCACCCTCTACAGCCAGTCCCTACTGCAGCAACAGAGTGCTGCGGGCAGCCAGAAAGAGGGACCTGAAGGAGCCAACCTGTTCATCTACCACCTGCCACAGGAGTTTGGGGACCAGGACATCCTACAGATGTTCATGCCTTTCGGAAACGTGGTGTCTGCCAAAGTCTTTATCGACAAACAGACCAATCTGAGCAAGTGCTTTGGTTTCGTCAGTTATGACAATCCAGTGTCTGCGCAGGCCGCCATTCAGGCGATGAACGGCTTTCAGATCGGCATGAAGCGTCTCAAAGTCCAACTTAAGCGCTCGAAGAACGACAGCAAACCGTACTGATCTTAGCACTAGGGCCTCTCTCATGTTACACTGCTAGGGTAAGTCCCCACTGCTGCCACGGTCACCAAACTGGGACTCCAAGGGGAGGGGGTGCACGAGGGGGGAGTTTCACCCTTTGACCACCAGAGGGAGCCACTCTCCCTAAACCGTCTTTTCAGCTTTTTCAATtaataacagtattattattattatttggtctcttttttttttctcctccacatGAACGCTTCCATTTTCcgccatttattattattttatttgtatgacTTGCGATGAATGAACAGCTATTATTGGTCAATTTTTTGATTCCGTTTAAGTCatgtgtaaacatttttttttaaagtaaatatttatacaatGGCTATTTCATTCTATGATGAAAACAACAGCAGAAAGTAACGATGtataaagtattatttgtttctctttgtGA

Function

GO:

id name namespace
GO:0006376 mRNA splice site selection biological_process
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0006397 mRNA processing biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030826-35 Predicted to enable mRNA 3'-UTR binding activity. Predicted to be involved in mRNA splice site selection and regulation of alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA processing. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytoplasm and nucleus. Is expressed in immature eye; musculature system; nervous system; and neural tube. Orthologous to human CELF2 (CUGBP Elav-like family member 2).

Ensembl:

ensembl_id ENSDART00000138873

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057353 lncRNA downstream 116627 23768478 ~ 23771489 (-) False XLOC_028784
TCONS_00057352 lncRNA downstream 677875 23204622 ~ 23210241 (-) True XLOC_028778
TCONS_00058206 lncRNA downstream 678069 23160015 ~ 23210047 (-) False XLOC_028778
TCONS_00058205 lncRNA downstream 762476 23119419 ~ 23125640 (-) True XLOC_028777
TCONS_00055772 lncRNA downstream 764606 23119419 ~ 23123510 (-) False XLOC_028777
TCONS_00058207 lncRNA upstream 344964 24253766 ~ 24269283 (-) False XLOC_028786
TCONS_00058208 lncRNA upstream 344964 24253766 ~ 24309850 (-) False XLOC_028786
TCONS_00058209 lncRNA upstream 344964 24253766 ~ 24376025 (-) True XLOC_028786
TCONS_00058210 lncRNA upstream 592327 24501129 ~ 24618981 (-) False XLOC_028787
TCONS_00058211 lncRNA upstream 592327 24501129 ~ 24619003 (-) False XLOC_028787
TCONS_00055782 mRNA downstream 14192 23772614 ~ 23873924 (-) False XLOC_028784
TCONS_00055781 mRNA downstream 29216 23771034 ~ 23858900 (-) False XLOC_028784
TCONS_00055783 mRNA downstream 48327 23775956 ~ 23839789 (-) True XLOC_028784
TCONS_00055779 mRNA downstream 128903 23743676 ~ 23759213 (-) False XLOC_028783
TCONS_00055778 mRNA downstream 128924 23740655 ~ 23759192 (-) False XLOC_028783
TCONS_00055791 mRNA upstream 1145708 25054510 ~ 25064510 (-) False XLOC_028790
TCONS_00055793 mRNA upstream 1175426 25084228 ~ 25168458 (-) True XLOC_028791
TCONS_00055794 mRNA upstream 1264497 25173299 ~ 25181552 (-) True XLOC_028792
TCONS_00055796 mRNA upstream 1279110 25187912 ~ 25215968 (-) False XLOC_028793
TCONS_00055795 mRNA upstream 1279110 25187912 ~ 25215968 (-) True XLOC_028793
TCONS_00055780 other downstream 133845 23746043 ~ 23754271 (-) True XLOC_028783
TCONS_00055776 other downstream 436185 23451817 ~ 23451931 (-) True XLOC_028782
TCONS_00055774 other downstream 468661 23419320 ~ 23419455 (-) True XLOC_028780
TCONS_00055773 other downstream 661267 23226733 ~ 23226849 (-) True XLOC_028779
TCONS_00055755 other downstream 1650822 22236358 ~ 22237294 (-) True XLOC_028767
TCONS_00055802 other upstream 1565404 25474206 ~ 25478995 (-) False XLOC_028796
TCONS_00055813 other upstream 1931984 25840786 ~ 25840902 (-) True XLOC_028802
TCONS_00055827 other upstream 2498344 26407146 ~ 26407263 (-) True XLOC_028811
TCONS_00055829 other upstream 3179569 27088371 ~ 27099285 (-) True XLOC_028815
TCONS_00055832 other upstream 3232377 27141179 ~ 27141303 (-) True XLOC_028817

Expression Profile

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