RNA id: TU2444911


Basic Information

Item Value
RNA id TU2444911
length 488
lncRNA type intronic
GC content 0.55
exon number 2
gene id G2137751
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 41974537 ~ 42040084 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttccctctagagaccgagcagacaagtcctctctagagaccgagcagacatgTCccctctagacaccgagcagacaagttccctctagagactgagcagacaagtcccctctagacaacgagcagacaagttccctctagagaccgagcagacaagttccctctagagaccgagcagacaagttccctctagagaccgagcagacaagtcccctctagagacctagcagacaagtcccctcgagagaccgtgtagacaagttcgctctcgacaccgagcagacaagttccctctagagaccgagcagacaagtcccctctagagaccaagcagacaagttccctctagacaccgagcagacaagttccctctagagaccgagcagacaagttccctctagagaccgagcagacaagttccctctagagaccgagcagacaagtcccctcgagagactgagcagacaactcccctcaagagactgagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2444898 lncRNA downstream 25369 41948500 ~ 41949168 (-) True G2137741
TU2444886 lncRNA downstream 58314 41912766 ~ 41916223 (-) True G2137729
TU2444820 lncRNA downstream 68130 41905190 ~ 41906407 (-) True G2137677
TU2444809 lncRNA downstream 73328 41898369 ~ 41901209 (-) True G2137671
TU2444805 lncRNA downstream 77191 41896843 ~ 41897346 (-) True G2137667
TU2444989 lncRNA upstream 182011 42222095 ~ 42226364 (-) True G2137814
TU2445032 lncRNA upstream 188917 42229001 ~ 42229225 (-) True G2137854
TU2445050 lncRNA upstream 237405 42277489 ~ 42277689 (-) True G2137868
TU2445055 lncRNA upstream 244079 42284163 ~ 42284378 (-) True G2137873
TU2445056 lncRNA upstream 246319 42286403 ~ 42286606 (-) True G2137874
XM_036966905.1 mRNA downstream 333371 41630582 ~ 41641166 (-) False LOC110509166
XM_036966906.1 mRNA downstream 333371 41630582 ~ 41641166 (-) False LOC110509166
XM_036966907.1 mRNA downstream 338358 41630582 ~ 41636179 (-) False LOC110509166
XM_036967120.1 mRNA downstream 347697 41587299 ~ 41626840 (-) False znf414
XM_036967118.1 mRNA downstream 347719 41587299 ~ 41626818 (-) False znf414
XM_036966040.1 mRNA upstream 320663 42360747 ~ 42368140 (-) True cfap410
XR_005040199.1 mRNA upstream 329781 42369865 ~ 42370321 (-) False LOC118944818
XR_005040198.1 mRNA upstream 329781 42369865 ~ 42370480 (-) True LOC118944818
XM_036966738.1 mRNA upstream 360431 42400515 ~ 42405657 (-) False LOC110509173
XM_036966736.1 mRNA upstream 360431 42400515 ~ 42410701 (-) False LOC110509173
TU2444782 other downstream 160336 41810795 ~ 41814201 (-) True G2137648
TU2444670 other downstream 238148 41731714 ~ 41736389 (-) True G2137555
TU2444707 other downstream 343154 41630661 ~ 41631383 (-) False LOC110509166
TU2444510 other downstream 713266 41260800 ~ 41261271 (-) True G2137419
TU2444116 other downstream 1498836 40472255 ~ 40475701 (-) False G2137111
TU2444984 other upstream 180838 42220922 ~ 42226364 (-) False G2137814
TU2444991 other upstream 180838 42220922 ~ 42226965 (-) False G2137814
TU2445575 other upstream 309132 42349216 ~ 42351452 (-) True G2138294
TU2446193 other upstream 1334663 43374747 ~ 43375558 (-) True emilin2a

Expression Profile