RNA id: TU2444991



Basic Information


Item Value
RNA id TU2444991
length 1010
RNA type TUCP
GC content 0.44
exon number 2
gene id G2137814
representative False

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 42220922 ~ 42226965 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aaatactattttattttatttgataaataGGATAGCCAGCTGCAGCTATCAccaagctatgctagctagctgttacaAGCTAACTGACTTGACAGAGAAATATCAGCTAGGATAGATTGGATAGAAGCTACACCAAgatatgctagctagctgctgacAGCTTGGCTAAGCAAGGCCAGCACAGGCTTTAGCCTACACATAGAACTGAATTAGCTGACCATCTTGAGATGGCAGTCAGAAGGGGAGAACTCAACTCCAAAACATTTTTCTCGCCATAGCAAAGCTGGCTTAGCTTACCTTGATGTACTGTCCTTGTTTGTGAGATTGAATGGTAAAGACACATCCACATGACTACTCACGTTTGCCTTCAGTCATGGCCGCTAGCATTTCTTAAAAACGAGGCCAAAACAGGATATGCAGTCACCCTTTAACCCAGAAGGCCCCTTGAGGTCAAAATACCTATATATTTTTTAGGCCaatgagaaagaagagaggagtgtATATCTGAAGGACAGAAGAGAGAAGTGTCAATGACAgaagggtgtgtgttgtgtgtgttgtgtgtgtgtgtgtacttactgTTTAAGCTCAGTCAGTGTGTTAATGTTGGGGTCTCCCAGTCTGACAGCCTCCTGGGCCCCATCCCCACTGTACTGCACCACGCCTACCCTGGACTCATTAAAACcaaactatacacacacacacacacacacacacagacacacagacagacacacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacaggatgggacgttaaacgggtgtcctgactctctatGGATACTAAAGCTCCCATGGAAcatatcgtaagagtaggggtgttaatccAGGTGGCGTGGATAAATTTCCAATCtgtccctcaaaccatcatggtcatcAGGGTcaataaaacattaaaataagggttaataaaaacattaaaataag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2444911 lncRNA downstream 180838 41974537 ~ 42040084 (-) True G2137751
TU2444907 lncRNA downstream 210086 41958837 ~ 42010836 (-) True G2137748
TU2444909 lncRNA downstream 245008 41966944 ~ 41975914 (-) True G2137749
TU2444898 lncRNA downstream 271754 41948500 ~ 41949168 (-) True G2137741
TU2444886 lncRNA downstream 304699 41912766 ~ 41916223 (-) True G2137729
TU2445032 lncRNA upstream 2036 42229001 ~ 42229225 (-) True G2137854
TU2445050 lncRNA upstream 50524 42277489 ~ 42277689 (-) True G2137868
TU2445055 lncRNA upstream 57198 42284163 ~ 42284378 (-) True G2137873
TU2445056 lncRNA upstream 59438 42286403 ~ 42286606 (-) True G2137874
TU2445059 lncRNA upstream 61043 42288008 ~ 42288329 (-) True G2137877
XM_036966151.1 mRNA downstream 83558 41906782 ~ 42137364 (-) True LOC110508267
XM_036966905.1 mRNA downstream 579756 41630582 ~ 41641166 (-) False LOC110509166
XM_036966906.1 mRNA downstream 579756 41630582 ~ 41641166 (-) False LOC110509166
XM_036966907.1 mRNA downstream 584743 41630582 ~ 41636179 (-) False LOC110509166
XM_036967120.1 mRNA downstream 594082 41587299 ~ 41626840 (-) False znf414
XM_036966040.1 mRNA upstream 133782 42360747 ~ 42368140 (-) True cfap410
XR_005040199.1 mRNA upstream 142900 42369865 ~ 42370321 (-) False LOC118944818
XR_005040198.1 mRNA upstream 142900 42369865 ~ 42370480 (-) True LOC118944818
XM_036966738.1 mRNA upstream 173550 42400515 ~ 42405657 (-) False LOC110509173
XM_036966736.1 mRNA upstream 173550 42400515 ~ 42410701 (-) False LOC110509173
TU2444782 other downstream 406721 41810795 ~ 41814201 (-) True G2137648
TU2444670 other downstream 484533 41731714 ~ 41736389 (-) True G2137555
TU2444707 other downstream 589539 41630661 ~ 41631383 (-) False LOC110509166
TU2444510 other downstream 959651 41260800 ~ 41261271 (-) True G2137419
TU2444116 other downstream 1745221 40472255 ~ 40475701 (-) False G2137111
TU2445575 other upstream 122251 42349216 ~ 42351452 (-) True G2138294
TU2446193 other upstream 1147782 43374747 ~ 43375558 (-) True emilin2a

Expression Profile