RNA id: TU2445567


Basic Information

Item Value
RNA id TU2445567
length 1341
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G2138287
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 42339661 ~ 42341071 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgTGGTGAAGATACTCCAATATCCAGAGAATAAGTATTTAATTGACAACAGCAACCCAGGTCTGGTAAACCTCCAGACAGGATACATATGGTTCACAGCTAACAAATTAAAACCAGGTgcagatgcgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaggtctggtTACACCACAGCTGGCTTTATTACATCATTTTCAGTTTACAACAAATGCATTTCagtgtgatttgtgtgtgtgtttgagtttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgggtataGGTGTAGGTGTGTTGGATATATGTAACTAccgatctgtgtgtgtgtgtgtgtgtatgtgtgtgtgagagagatgtctAAATGACTGATCTAGAATAATAACAGATAAGAGACACTTTCACTGAAATTAAAAACTATAAAACTGTTTGAAAACATAACGACTTTGTAAGTCAAAGCCTTTTTAAACTTAAGACTGTTTGAAAAGTTAAGACTTTGAAAAGTTAAGACTGTTTGAAAAGTGAAGACTGTTTTGCGAGACATTGACACTGTGTGTAACTCCTTCCACTAGAATATCACATTTAGTGTAAAATACAAACGTACTGATATAGGCCTCACAGAGAGGGATCTCTTATAGAAAAACacaaaaatcaacaacaacaacaacaattgaCCTACAGCTGTAACATTGTACACATTCAATATCAGTAACTCTCTGATAAGAGAGGCTTGGTTGTTTGTGCTTATCTAGTTAATGGTGGAATCTGTCATTTAACTAATTTAAAAGATTCAACAATCTGGAGGCTCTTGTGTCTTTCGGACGAGCTAGAAGTTTAGCTTCCAAGTTTTGCCATTTTGCTAAAACCTGGAAAATCACAGAGCACCATATGACTTTAATTCAAAACCCAGAGAACACccttttgtttatttttcataACTGAAAAGATTCTTACGGACTACAGCTTTAACAGCTAGTTAGAACACAGCTGGTTAGCTCTAACGAGCTGGTTAGCTGCTTAGCTGGTTAGCTGGTTAGCAGACCCAGCGGATGAAGCGTTCAAGGAATGTGGGTTTCCCCAGCGTGGCGTAGTCCTCTCCTCTAAAGATGGCTGACGTGTCTCCCAGGGCAACCTTCCTCAACACTTCCTGGTCCGTGTCGGTCCCCATGGCGATCACCGTGGGAATGCCCTCGGCCCGTCGCATGGCTGAGACACCCTCCTCCAGGCTGTCGCCCGCGGTGATGCCGTCGGTGATAAAGACGAAGGACAGTTCAGCGTTACGACGTGCCAGGCGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2445594 lncRNA downstream 14895 42324317 ~ 42324766 (-) True G2138313
TU2445059 lncRNA downstream 51332 42288008 ~ 42288329 (-) True G2137877
TU2445056 lncRNA downstream 53055 42286403 ~ 42286606 (-) True G2137874
TU2445055 lncRNA downstream 55283 42284163 ~ 42284378 (-) True G2137873
TU2445050 lncRNA downstream 61972 42277489 ~ 42277689 (-) True G2137868
TU2445563 lncRNA upstream 27173 42368244 ~ 42385423 (-) False G2138286
TU2445565 lncRNA upstream 27173 42368244 ~ 42385423 (-) True G2138286
TU2445642 lncRNA upstream 90218 42431289 ~ 42431644 (-) True G2138348
TU2445653 lncRNA upstream 119358 42460429 ~ 42461528 (-) True G2138358
TU2445662 lncRNA upstream 134399 42475470 ~ 42475859 (-) True G2138366
XM_036966151.1 mRNA downstream 202297 41906782 ~ 42137364 (-) True LOC110508267
XM_036966905.1 mRNA downstream 698495 41630582 ~ 41641166 (-) False LOC110509166
XM_036966906.1 mRNA downstream 698495 41630582 ~ 41641166 (-) False LOC110509166
XM_036966907.1 mRNA downstream 703482 41630582 ~ 41636179 (-) False LOC110509166
XM_036967120.1 mRNA downstream 712821 41587299 ~ 41626840 (-) False znf414
XM_036966040.1 mRNA upstream 19676 42360747 ~ 42368140 (-) True cfap410
XR_005040199.1 mRNA upstream 28794 42369865 ~ 42370321 (-) False LOC118944818
XR_005040198.1 mRNA upstream 28794 42369865 ~ 42370480 (-) True LOC118944818
XM_036966738.1 mRNA upstream 59444 42400515 ~ 42405657 (-) False LOC110509173
XM_036966736.1 mRNA upstream 59444 42400515 ~ 42410701 (-) False LOC110509173
TU2444991 other downstream 112696 42220922 ~ 42226965 (-) False G2137814
TU2444984 other downstream 113297 42220922 ~ 42226364 (-) False G2137814
TU2444782 other downstream 525460 41810795 ~ 41814201 (-) True G2137648
TU2444670 other downstream 603272 41731714 ~ 41736389 (-) True G2137555
TU2444707 other downstream 708278 41630661 ~ 41631383 (-) False LOC110509166
TU2445575 other upstream 8145 42349216 ~ 42351452 (-) True G2138294
TU2446193 other upstream 1033676 43374747 ~ 43375558 (-) True emilin2a

Expression Profile