Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00005276 |
| length | 777 |
| RNA type | nonsense_mediated_decay |
| GC content | 0.45 |
| exon number | 7 |
| gene id | XLOC_002847 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 29735900 ~ 29744921 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0042073 | intraciliary transport | biological_process |
| GO:0048793 | pronephros development | biological_process |
| GO:0048264 | determination of ventral identity | biological_process |
| GO:0060271 | cilium assembly | biological_process |
| GO:0060041 | retina development in camera-type eye | biological_process |
| GO:0031514 | motile cilium | cellular_component |
| GO:0042995 | cell projection | cellular_component |
| GO:0036064 | ciliary basal body | cellular_component |
| GO:0030992 | intraciliary transport particle B | cellular_component |
| GO:0005813 | centrosome | cellular_component |
| GO:0005856 | cytoskeleton | cellular_component |
| GO:0005929 | cilium | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| id | description |
|---|---|
| ko03036 | Chromosome and associated proteins |
| id | description |
|---|---|
| ZDB-GENE-080102-3 | Acts upstream of or within animal organ development; cilium assembly; and determination of ventral identity. Located in ciliary basal body. Is expressed in several structures, including forerunner cell group; nervous system; otic vesicle; pronephric duct; and spinal cord neural tube. Orthologous to human IFT46 (intraflagellar transport 46). |
| ensembl_id | ENSDART00000149772 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00006075 | lncRNA | downstream | 245099 | 29266270 ~ 29491087 (-) | True | XLOC_002843 |
| TCONS_00005269 | lncRNA | downstream | 598182 | 29128202 ~ 29138004 (-) | True | XLOC_002841 |
| TCONS_00006074 | lncRNA | downstream | 1271160 | 28460213 ~ 28465026 (-) | True | XLOC_002834 |
| TCONS_00005770 | lncRNA | downstream | 1318007 | 28417651 ~ 28418179 (-) | True | XLOC_002830 |
| TCONS_00006073 | lncRNA | downstream | 1350617 | 28382085 ~ 28385569 (-) | True | XLOC_002828 |
| TCONS_00005294 | lncRNA | upstream | 1523744 | 31262852 ~ 31294777 (-) | False | XLOC_002858 |
| TCONS_00006076 | lncRNA | upstream | 1523744 | 31262852 ~ 31295006 (-) | True | XLOC_002858 |
| TCONS_00006077 | lncRNA | upstream | 2338703 | 32077811 ~ 32084121 (-) | False | XLOC_002862 |
| TCONS_00006078 | lncRNA | upstream | 2338703 | 32077811 ~ 32084624 (-) | True | XLOC_002862 |
| TCONS_00006079 | lncRNA | upstream | 2477305 | 32216413 ~ 32250771 (-) | False | XLOC_002863 |
| TCONS_00005274 | mRNA | downstream | 2992 | 29731060 ~ 29733194 (-) | True | XLOC_002846 |
| TCONS_00005272 | mRNA | downstream | 463429 | 29269998 ~ 29272757 (-) | False | XLOC_002844 |
| TCONS_00005271 | mRNA | downstream | 463429 | 29269998 ~ 29272757 (-) | True | XLOC_002844 |
| TCONS_00005270 | mRNA | downstream | 499326 | 29226180 ~ 29236860 (-) | True | XLOC_002842 |
| TCONS_00005268 | mRNA | downstream | 615651 | 29113437 ~ 29120535 (-) | True | XLOC_002840 |
| TCONS_00005277 | mRNA | upstream | 11921 | 29751029 ~ 29768556 (-) | True | XLOC_002848 |
| TCONS_00005278 | mRNA | upstream | 54709 | 29793817 ~ 29809105 (-) | True | XLOC_002849 |
| TCONS_00005279 | mRNA | upstream | 76536 | 29815644 ~ 29816467 (-) | True | XLOC_002850 |
| TCONS_00005280 | mRNA | upstream | 81064 | 29820172 ~ 29831944 (-) | False | XLOC_002851 |
| TCONS_00005281 | mRNA | upstream | 85122 | 29824230 ~ 29827000 (-) | False | XLOC_002851 |
| TCONS_00005273 | other | downstream | 28004 | 29708068 ~ 29708182 (-) | True | XLOC_002845 |
| TCONS_00005263 | other | downstream | 812553 | 28923517 ~ 28923633 (-) | True | XLOC_002838 |
| TCONS_00005262 | other | downstream | 813935 | 28922135 ~ 28922251 (-) | True | XLOC_002837 |
| TCONS_00005252 | other | downstream | 1281015 | 28454500 ~ 28455171 (-) | True | XLOC_002833 |
| TCONS_00005251 | other | downstream | 1287318 | 28447906 ~ 28448868 (-) | True | XLOC_002832 |
| TCONS_00005286 | other | upstream | 792035 | 30531143 ~ 30531257 (-) | True | XLOC_002854 |
| TCONS_00005293 | other | upstream | 1282248 | 31021356 ~ 31104754 (-) | True | XLOC_002857 |
| TCONS_00005308 | other | upstream | 2803428 | 32542536 ~ 32610769 (-) | False | XLOC_002866 |
| TCONS_00005309 | other | upstream | 2828516 | 32567624 ~ 32610694 (-) | True | XLOC_002866 |
| TCONS_00005329 | other | upstream | 3637710 | 33376818 ~ 33376941 (-) | True | XLOC_002883 |
