RNA id: TU2445757


Basic Information

Item Value
RNA id TU2445757
length 1800
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G2138424
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 42623290 ~ 42625470 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTAGGACAACATATTGAAATGCATtagaacggggtatggtagtaggtaccaggcgcaccagtttgtgtgtcaagaactgcagcgctgttgggtttttcacgctcaacagtttcctgtgtgtgtcaagaaaGGTCAACcaccccaaaggacatccagccaacttgacaactgtgggaagcattggagtcaacatgggccagcatccctgtggaatgatttcaacaccttgtagagtcaacatgggccagcatccctgtggaacgatttcaacaccttgtagagtccacgcccggatatattgaggctgttctgaggggaaaaagaggtgcaactcaatattagggcgTGTTCTTAATGTTTGATATACTCAGTGTAGTATGTAATAACTGGTTTTGCttctttgttttttatttttacaatttgaGCAGTGTTGATATGTAATGATATGGTGTTATCATATGGTGTAATGATATGGTGTTATCATATGGTGTGATGATATGGTGTTATGATGCGGTGTTATCATATGCTGTTATCATATGGTGTAATAATATGGTGTTATCATATGGTGTGATGATATGGTGTTACCATATGGTGTTATCATATGGTGTTATGATGCGGTGTTATCATATGCTGTTATCATATGGTGTAATAATATGGTGTTATCATATGGTGTTATCATATGCTGTTATCATATGGTGTAATAATATGCTGTTATCATATGCTGTTATCATATGCTGTTATCATATGGTGTTATCATATGGTGTTATATAGTGTAATAATATGGTGTTCTCATATGGTGTTATCATATGGTGTAATGATATAGTGTTATCAAAGGGTGTTATGATGCGGTGTTATCATATGGTGTAATAATATGCTGTTATCATATGCTGTTATCATATGCTGTTATCATAGGGTGTAATAATATGGTGTTATCATATGCTGTTATCATATGGTGTTATCATAGGGTGTAATAATATGGTGTTATCATATGCTGTTATCATATGCTGTTATCATATGGTGTTATCATAGGGTGTAATAATATGGTGTTATCATATGCTGTTATCATATGCTGTTATCATATGGTGTTATCATAGGGTGTTATGATGCGGTGTTATCATATGCTGTTATCATATGGTGTAATGATATGGTGTTATCATATGGTGTTATCATATGGTATTATGATGATATTAATAAGCAGTGTTAATAAGGACAAAACAGACCTCGTCGACAAACGGTTGAAAGCAGATGGCTGTGTTAATTTTCTGGTAATTTTCAGACGATTCTCCATGTTGAATCACCAGCTTTTATCGCCACCCAGATCTGCACAGCCGCCGTCCGTTATGTTGTGTATTGTCCTTCAGGATGACATTTCATCTGAGGATCTGGAGTCGTGAGATATAAATAagatataaatataaaacatcctctctttctcttctactCTCAAATAGATGTATTGGCTAGAAATATGGTTTTAACATTGTATTTTATAATAACAAGCTTATAAAGgctctttctttaaaaaaaaactattattgAGGAGACCAGGTTGTCCAAATGTCTTTTCTTTAATTCTACATTTATAGATTCCCATTCCAAAGTGCCTGTTGGTCACCATACGACAGAAGGCTCCTAGATGTATCTATTTGCTTTATTTCTGCAAAGAACGTGAGGAGTGGAATAGGTTCCtttcaaataatgtttttttctgaaatgATTCCAAAATGTCTGCCAATAAAAAGGACAAAATCTAGAATGGAAATCATAGATCACTGCCCTGTATATAATCGTTGTGTCcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2445734 lncRNA downstream 8522 42611057 ~ 42615032 (-) True G2138420
TU2445727 lncRNA downstream 23416 42599681 ~ 42600138 (-) True G2138414
TU2445686 lncRNA downstream 100770 42522314 ~ 42522784 (-) True G2138386
TU2445663 lncRNA downstream 145911 42476443 ~ 42477643 (-) True G2138367
TU2445662 lncRNA downstream 147695 42475470 ~ 42475859 (-) True G2138366
TU2445748 lncRNA upstream 137 42625607 ~ 42630720 (-) False LOC110508271
TU2445751 lncRNA upstream 137 42625607 ~ 42630720 (-) True LOC110508271
TU2445791 lncRNA upstream 19048 42644518 ~ 42645096 (-) True G2138439
TU2445793 lncRNA upstream 22952 42648422 ~ 42648758 (-) True G2138441
TU2445836 lncRNA upstream 93337 42718807 ~ 42806277 (-) False G2138471
XM_021590154.2 mRNA downstream 115349 42498739 ~ 42508205 (-) True them6
XM_036965944.1 mRNA downstream 115404 42498739 ~ 42508150 (-) False them6
XM_036965945.1 mRNA downstream 115422 42498283 ~ 42508132 (-) False them6
XM_036965943.1 mRNA downstream 129717 42471891 ~ 42493837 (-) True LOC110509174
XM_036966737.1 mRNA downstream 212853 42400515 ~ 42410701 (-) True LOC110509173
XM_036966602.1 mRNA upstream 4675 42630145 ~ 42691448 (-) False LOC110508271
XM_036966601.1 mRNA upstream 4675 42630145 ~ 42703120 (-) False LOC110508271
XM_036966603.1 mRNA upstream 4675 42630145 ~ 42703120 (-) False LOC110508271
XM_036967019.1 mRNA upstream 108173 42733643 ~ 42772837 (-) False LOC110509177
XM_036967020.1 mRNA upstream 108173 42733643 ~ 42772837 (-) False LOC110509177
TU2445575 other downstream 272102 42349216 ~ 42351452 (-) True G2138294
TU2444991 other downstream 396589 42220922 ~ 42226965 (-) False G2137814
TU2444984 other downstream 397190 42220922 ~ 42226364 (-) False G2137814
TU2444782 other downstream 809353 41810795 ~ 41814201 (-) True G2137648
TU2444670 other downstream 887165 41731714 ~ 41736389 (-) True G2137555
TU2446193 other upstream 749277 43374747 ~ 43375558 (-) True emilin2a

Expression Profile