RNA id: TU2445842


Basic Information

Item Value
RNA id TU2445842
length 1305
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G2138471
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 42718807 ~ 42851163 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctggtctgtcatattataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataataaaatagagacagtagatctagctggtctgtcatattataatagagactgtagatctagctggtctgtcataatataatagagacagtggatgtagctggtctgtcataataaaatagagacagtagatctagctggtctgtcatattacagagattgtagatctagctggtctgtcatattataatagagacagtagctctagctcgTCTGACATaatgtagagacagtagatctagctcgtctgacataatatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtcgatctagctggtctgtcataatataatagcgacagtagatctagctggtctgtcataacatagagaaagtagatctagctggtctgtcatcatataatagatacagtagatctaactggtctgtcatattataatagagacagtagatctagctggtctgtcataatataatagagaaagtagtttagctggtctgtcatattacagagacagtagatctagctggtctgtcataatataatagagaaagtagttctagctggtctgtcatattacagagacagtagatctagctggtctgttataatataatagagacagtagatctagctggtccgtcataataaatagaggcagtagatctagttggtctgtcataatataatagagacagtagatctagctggtttgtcatattacagagattgtagatctagctggtctgtcatattataatagagacagtagctctagctcgTCTGACATaatgtagagacagtagatctagctcgtctgacataatatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcacaatataatagagagagtagatctagctggtctgtcataataaaaatagagacagtagatctagctggtctgtcataataaatagagacagtagatctagctggtctgtcataataaaatagagacagtagatctagctggtctgtcataatataatagagacagtatatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtaaatttagctggtctgtcataatataattgtaacagtagttctagct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2445878 lncRNA downstream 10297 42779211 ~ 42780170 (-) True G2138502
TU2445868 lncRNA downstream 28127 42761874 ~ 42762340 (-) True G2138492
TU2445857 lncRNA downstream 52873 42736952 ~ 42737594 (-) True G2138482
TU2445793 lncRNA downstream 141709 42648422 ~ 42648758 (-) True G2138441
TU2445791 lncRNA downstream 145371 42644518 ~ 42645096 (-) True G2138439
TU2445844 lncRNA upstream 58 42796110 ~ 42802836 (-) False G2138471
TU2445834 lncRNA upstream 1006 42797058 ~ 42836269 (-) False G2138471
TU2445837 lncRNA upstream 2122 42798174 ~ 42813517 (-) False G2138471
TU2445829 lncRNA upstream 5201 42801253 ~ 42826490 (-) False G2138471
TU2445824 lncRNA upstream 7852 42803904 ~ 42832196 (-) False G2138471
XM_036967027.1 mRNA downstream 17630 42733643 ~ 42772837 (-) False LOC110509177
XM_036967030.1 mRNA upstream 81444 42877496 ~ 42959408 (-) True LOC110508296
XM_036967031.1 mRNA upstream 177303 42973355 ~ 42987359 (-) True LOC110509179
XM_036966351.1 mRNA upstream 245170 43041222 ~ 43077460 (-) True LOC118944838
XM_036966530.1 mRNA upstream 547479 43343531 ~ 43398034 (-) False emilin2a
TU2445575 other downstream 439015 42349216 ~ 42351452 (-) True G2138294
TU2444991 other downstream 563502 42220922 ~ 42226965 (-) False G2137814
TU2444984 other downstream 564103 42220922 ~ 42226364 (-) False G2137814
TU2444782 other downstream 976266 41810795 ~ 41814201 (-) True G2137648
TU2444670 other downstream 1054078 41731714 ~ 41736389 (-) True G2137555
TU2446193 other upstream 578695 43374747 ~ 43375558 (-) True emilin2a

Expression Profile