RNA id: TU2445931


Basic Information

Item Value
RNA id TU2445931
length 2859
lncRNA type intronic
GC content 0.48
exon number 3
gene id G2138540
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 42903457 ~ 42910028 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcctctgtcctgatcccctattagttcctgtcctctcctctgtcctgatcctctattagttcctgtcctctcctctgtcctgatcctctattagttcctgtcctctcctctgtcctgatcctctattagttcctgttctctcctctgtcctgatcctctattagttcctgtcctctcctctgttctgatcctctattagttcctgtcctctcctctgtcctgatcccctattagttcctgtcctctcctctgtcctgatcctctattagttccttgtcctctcctctgtcctgatcctctattagttcctgttctctcctctgtcctgatcctctattagttcctgtcctctcctctgtcctgatcctatattagttcctctcctctgtcaccactgtcctctcctctattagttcctgtcctctcctctgtcctgatcctctattagttcctgtcctctcctctgtcctgatcctctattagttcctgtcctctcctctgtcctgaacctctattcgttcctgtcctctcatctgtcctgatcctctattagttcctgtcctctcatctgtcctgatcctctattagttcctgttctctcctctgtcctgatcctctattagttcctgtcctctcctttgtcctgatcctctattagttcctgtcctccactctgtcaccactgtcctgatcctctattagttcctgtcctctcgtctgtcctgatcctctattagttcctgttctctccgctgtcctgatcctctattagttcctgttctctcctctgtcctgattctCTATAAGCCCTGtcctctcctttgtcctgatcctctattagttcctgtcctccactctgtcaccactgtcctgatcctctattagttcctgtcctctcgtctgtcctgatcctctattagttcctgttctctcctctgtcctgatcctctattagttcctgtcatctcctctgtcctgaccctctattagttcctgttctctgctctgccctgatcctctattagttcctgtcctctactctgtcatcactgtcctgatcctctattagttcctgttctctgctctgccctgatcctctattagtttctgtcctctcctctgtcctgatcctctattagttcctctctgtcaccactgtcctgatcctttattagttcctgtcctctcctctgtcctgatcctctattagttcctgttctctcctctgtcctgatcctctattagttcctgtcctctcctctgtcctgaacctctattcgttcctgtcctctcatctgtccCGATCCTCTATTAgatcctgttctctcctctgtcctgatcctcaattagttcctgtcctctcctctgccctgatcctctattagttcctgtcctctactctgtcagcactgtcctgatcctctattagtttctgtcctctcctctgtcctgatcctctattagttcctctctgtcaccactgtcctgatccGCTATtcgttcctgtcctctcatctgtccCGATCCTCTATTAgatcctgttctctcctctgtcctgatcctcaattagttcctgtcctctcctctgtcctgatcctctattagttcctctcctctgtcaccactgtcctgagcctctattagttcctgtcctctcctctgtcctgattctatattagttcctgtcctctcctctgtcctgatcctctattagttcctgtcctctcctctgtcctgatcctctattagttcctgtcctctcctctgttctgatcctctattagtttctgtcctctcctctgtcctgatccccctattagttcctgtcctctcctctgtcctgatcctctattagttccttgtcctctcctctgtcctgatcctctattagttcctgttctctcctctgtcctgatcctctattagttcctgtcctctcctctgtcctgatcctatattagttcctctcctctgtcaccactgtcctctcctctattagttcctgtcctctcctctgtcctgatcctctattagttcctgtcctctcctctgtcctgatcctctattagttcctgtcctctcctctgtcctgaacctctattcgttcctgtcctctcatctgtcctgatcctctattagttcctgtcctctcatctgtcctgatcctctattagttcctgttctctcctctgtcctgatcctctattagttcctgtcctctcctttgtcctgatcctctattagttcctgtcctccactctgtcaccactgtcctgatcctctattagttcctgtcctctcgtctgtcctgatcctctattagttcctgttctctgctctgccctgatcctctattagttcctgtcctctcatctgtcctgatcctctattagttcctgttctctccgctgtcctgatcctctattagttcctgtcctctcctctgtcctgaccctctattagttcctgttctctgctctgccctgatcctctattagttcctgtcctctactctgtcagcactgtcctgatcctctattagttcctgttctctgctctgccctgatcctctattagttcatgtcctctactctgtcagcactgtcctgatcctctattagtttctgtcctctcctctgtcctgatcctctattagttcctctcctctgtcaccactgtcctgatcctctattagttcctgtcctctcctctgtcctgatcctctattagttcctgtactctcctctgtcctgatcctctattagttcctgtcctctcctctgtcctgaacctctattcgttcctgtcctctcctctgtcctgatcctctattagttcatgttctctcctctgtcctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2445904 lncRNA downstream 40914 42860602 ~ 42862543 (-) True G2138525
TU2445908 lncRNA downstream 45050 42857351 ~ 42858407 (-) True G2138526
TU2445835 lncRNA downstream 52294 42809200 ~ 42851163 (-) False G2138471
TU2445935 lncRNA upstream 8671 42918699 ~ 42921253 (-) True G2138543
TU2446015 lncRNA upstream 128189 43038217 ~ 43039942 (-) True G2138593
TU2446024 lncRNA upstream 174047 43084075 ~ 43084938 (-) True G2138601
TU2446058 lncRNA upstream 220861 43130889 ~ 43131310 (-) True G2138634
TU2446021 lncRNA upstream 245049 43155077 ~ 43156881 (-) True G2138598
XM_036967027.1 mRNA downstream 130620 42733643 ~ 42772837 (-) False LOC110509177
XM_036967031.1 mRNA upstream 63327 42973355 ~ 42987359 (-) True LOC110509179
XM_036966351.1 mRNA upstream 131194 43041222 ~ 43077460 (-) True LOC118944838
XM_036966530.1 mRNA upstream 433503 43343531 ~ 43398034 (-) False emilin2a
TU2445575 other downstream 552005 42349216 ~ 42351452 (-) True G2138294
TU2444991 other downstream 676492 42220922 ~ 42226965 (-) False G2137814
TU2444984 other downstream 677093 42220922 ~ 42226364 (-) False G2137814
TU2444782 other downstream 1089256 41810795 ~ 41814201 (-) True G2137648
TU2444670 other downstream 1167068 41731714 ~ 41736389 (-) True G2137555
TU2446193 other upstream 464719 43374747 ~ 43375558 (-) True emilin2a

Expression Profile