RNA id: TU2446130


Basic Information

Item Value
RNA id TU2446130
length 419
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G2138694
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 43304471 ~ 43304889 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTTtccgcctgccatatcagttttgttatactcacagatattatttgaacagttttagaaactttagagtgtttcctatccaatactaccaatcatatgcatatcctggcttctgggcctgagtagcaggcagtttactctgggcacctcagtcatccaaatactgccccctatccctaagaagttttacaTTTTAAGATCCCAGACTCTATCTTTAAGATGGCGTCTCATGGAGACATAGCATGCCCCGTTTGAGCTACTCCATGAAGTGatgttgcaggctagctcagtgctgccctctCTCATTGAGAGTCTCAAGTTGAAGGCCGACcagggtactgcaggctgccattagcaacaCATTTATACTTACTTCTTCTGTGTGTGATTTTCAAATAATTGGTTCATACAGTACatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2446126 lncRNA downstream 20473 43280793 ~ 43283998 (-) True G2138691
TU2446122 lncRNA downstream 21315 43280414 ~ 43283156 (-) False G2138691
TU2446107 lncRNA downstream 56599 43246749 ~ 43247872 (-) True G2138679
TU2446097 lncRNA downstream 63183 43232568 ~ 43241288 (-) True G2138670
TU2446094 lncRNA downstream 74354 43229583 ~ 43230117 (-) True G2138668
TU2446184 lncRNA upstream 8527 43313416 ~ 43314921 (-) False G2138741
TU2446185 lncRNA upstream 8527 43313416 ~ 43332273 (-) False G2138741
TU2446186 lncRNA upstream 18902 43323791 ~ 43332273 (-) True G2138741
TU2446222 lncRNA upstream 93867 43398756 ~ 43398967 (-) True G2138776
TU2446227 lncRNA upstream 102353 43407242 ~ 43407474 (-) True G2138781
XM_036966351.1 mRNA downstream 227011 43041222 ~ 43077460 (-) True LOC118944838
XM_036967031.1 mRNA downstream 317112 42973355 ~ 42987359 (-) True LOC110509179
XM_036967030.1 mRNA downstream 345063 42877496 ~ 42959408 (-) True LOC110508296
XM_036967028.1 mRNA downstream 531634 42743228 ~ 42772837 (-) False LOC110509177
XM_036966530.1 mRNA upstream 38642 43343531 ~ 43398034 (-) False emilin2a
TU2445575 other downstream 953019 42349216 ~ 42351452 (-) True G2138294
TU2444991 other downstream 1077506 42220922 ~ 42226965 (-) False G2137814
TU2444984 other downstream 1078107 42220922 ~ 42226364 (-) False G2137814
TU2444782 other downstream 1490270 41810795 ~ 41814201 (-) True G2137648
TU2444670 other downstream 1568082 41731714 ~ 41736389 (-) True G2137555
TU2446193 other upstream 69858 43374747 ~ 43375558 (-) True emilin2a

Expression Profile