RNA id: TU2446227


Basic Information

Item Value
RNA id TU2446227
length 233
lncRNA type intronic
GC content 0.47
exon number 1
gene id G2138781
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 43407242 ~ 43407474 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGTTATAGGGTTGTAGCTGGATAATAGGACTGGATCTGGGTTATAGGGCTGTAGCTGGATAATAGGACTGGATCTGGGTTATAGGGCTAGAGCTGGATAATATGACTGGATCTGGGTTATAGGGCTGTAGCTGGATAATAGGACTGGATCTGGGTTATAGGGCTCGAGATGGATAATAGGACTGGATCTGGGTTATAGGGCTAGAGCTGGATAATAGGACTGGATCCGGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2446222 lncRNA downstream 8275 43398756 ~ 43398967 (-) True G2138776
TU2446185 lncRNA downstream 74969 43313416 ~ 43332273 (-) False G2138741
TU2446186 lncRNA downstream 74969 43323791 ~ 43332273 (-) True G2138741
TU2446184 lncRNA downstream 92321 43313416 ~ 43314921 (-) False G2138741
TU2446130 lncRNA downstream 102353 43304471 ~ 43304889 (-) True G2138694
TU2446317 lncRNA upstream 37058 43444532 ~ 43448124 (-) False G2138859
TU2446320 lncRNA upstream 37058 43444532 ~ 43445627 (-) False G2138859
TU2446321 lncRNA upstream 37058 43444532 ~ 43446140 (-) False G2138859
TU2446323 lncRNA upstream 37058 43444532 ~ 43448124 (-) True G2138859
TU2446335 lncRNA upstream 59306 43466780 ~ 43469437 (-) True G2138871
XM_036966530.1 mRNA downstream 9208 43343531 ~ 43398034 (-) False emilin2a
XM_036966351.1 mRNA downstream 329782 43041222 ~ 43077460 (-) True LOC118944838
XM_036967031.1 mRNA downstream 419883 42973355 ~ 42987359 (-) True LOC110509179
XM_036967030.1 mRNA downstream 447834 42877496 ~ 42959408 (-) True LOC110508296
XM_036967029.1 mRNA downstream 634405 42746681 ~ 42772837 (-) True LOC110509177
TU2446193 other downstream 31684 43374747 ~ 43375558 (-) True emilin2a
TU2445575 other downstream 1055790 42349216 ~ 42351452 (-) True G2138294
TU2444991 other downstream 1180277 42220922 ~ 42226965 (-) False G2137814
TU2444984 other downstream 1180878 42220922 ~ 42226364 (-) False G2137814
TU2444782 other downstream 1593041 41810795 ~ 41814201 (-) True G2137648

Expression Profile