RNA id: TCONS_00055798


Basic Information

Item Value
RNA id TCONS_00055798
length 529
RNA type mRNA
GC content 0.45
exon number 4
gene id XLOC_028795
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 25251855 ~ 25271455 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGGAGGAGGTGGTGCTGGATTACATCCCAAACCCACAGCTGGAGCTGGCCATCGTCATGCTTATCGTGCCTTTCATAGTCAACTCTATAATGTTCTGGGTGGTGGACAGTTTAACAATGCGCAAATATAAGAAGATGACGTCTCTGGAAGGCTCACGCGACTCTCCGAAACAAGTAGACGCTTTGCCAGATGAGAGCAATGATGAAGCTGAGgtgCTGCTAAAGAAAGATGATGAAGCAGCGGTGTGTTCTGAAGAGGAAGATCACGTCACAACAGAAGAAGCCTTAATACGAGCAACTACCTTCGAAGGCGGCTTCCTGATTAGGAAAGAATGGATTTGGACCTTTAATTAGGTGGAATCTCAACGCAACCACACAAATAGACCTATTTATGAAACAGGACTCCAGTTgtttgttgttagcatgatgctaagcTAACAACACAATGGCAAAATACTAATACTATGTTCCAGACAGCTCGAAACTTCCGTCTCCTACGTGAAAAGTCTGGAATGCCAATCTCAGTGGG

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-912 Predicted to be integral component of membrane. Predicted to be active in membrane.

Ensembl:

ensembl_id ENSDART00000142819

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058217 lncRNA downstream 4317 25245031 ~ 25247848 (-) True XLOC_028794
TCONS_00055792 lncRNA downstream 191429 25058475 ~ 25060736 (-) True XLOC_028790
TCONS_00057356 lncRNA downstream 203158 24971644 ~ 25049007 (-) True XLOC_028789
TCONS_00058216 lncRNA downstream 203295 24924363 ~ 25048870 (-) False XLOC_028789
TCONS_00057355 lncRNA downstream 280084 24833526 ~ 24972081 (-) False XLOC_028789
TCONS_00055803 lncRNA upstream 216755 25474206 ~ 25478126 (-) False XLOC_028796
TCONS_00055804 lncRNA upstream 216755 25474206 ~ 25479379 (-) True XLOC_028796
TCONS_00058218 lncRNA upstream 237005 25494456 ~ 25497067 (-) True XLOC_028797
TCONS_00055817 lncRNA upstream 748991 26006442 ~ 26007456 (-) True XLOC_028804
TCONS_00055823 lncRNA upstream 869726 26127177 ~ 26147550 (-) True XLOC_028807
TCONS_00055796 mRNA downstream 36197 25187912 ~ 25215968 (-) False XLOC_028793
TCONS_00055795 mRNA downstream 36197 25187912 ~ 25215968 (-) True XLOC_028793
TCONS_00055794 mRNA downstream 70613 25173299 ~ 25181552 (-) True XLOC_028792
TCONS_00055793 mRNA downstream 83707 25084228 ~ 25168458 (-) True XLOC_028791
TCONS_00055791 mRNA downstream 187655 25054510 ~ 25064510 (-) False XLOC_028790
TCONS_00055800 mRNA upstream 215054 25472505 ~ 25485214 (-) False XLOC_028796
TCONS_00055801 mRNA upstream 215515 25472966 ~ 25485404 (-) False XLOC_028796
TCONS_00055805 mRNA upstream 239653 25497104 ~ 25515591 (-) False XLOC_028798
TCONS_00055806 mRNA upstream 240028 25497479 ~ 25515154 (-) False XLOC_028798
TCONS_00055807 mRNA upstream 253060 25510511 ~ 25515513 (-) True XLOC_028798
TCONS_00055780 other downstream 1497894 23746043 ~ 23754271 (-) True XLOC_028783
TCONS_00055776 other downstream 1800234 23451817 ~ 23451931 (-) True XLOC_028782
TCONS_00055774 other downstream 1832710 23419320 ~ 23419455 (-) True XLOC_028780
TCONS_00055773 other downstream 2025316 23226733 ~ 23226849 (-) True XLOC_028779
TCONS_00055755 other downstream 3014871 22236358 ~ 22237294 (-) True XLOC_028767
TCONS_00055802 other upstream 216755 25474206 ~ 25478995 (-) False XLOC_028796
TCONS_00055813 other upstream 583335 25840786 ~ 25840902 (-) True XLOC_028802
TCONS_00055827 other upstream 1149695 26407146 ~ 26407263 (-) True XLOC_028811
TCONS_00055829 other upstream 1830920 27088371 ~ 27099285 (-) True XLOC_028815
TCONS_00055832 other upstream 1883728 27141179 ~ 27141303 (-) True XLOC_028817

Expression Profile

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