RNA id: TU2446378


Basic Information

Item Value
RNA id TU2446378
length 1606
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G2138899
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 43563661 ~ 43565303 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agatctagttggtctgtcataatataatagagacagtagatctagctggtctgtgataatataataaagacatgctttagcttgtctgttataatataaaagagacagtagatgtagctggtctgtcataaactaattaagacagtagatctagctggtctgtcaaattattatagagacagtatatctagctggtgtgtcataatataatacatacagcagatctagctggtctgtcatgatacaatagagacagtagatctagctggtctttcataatagaATTGAGACagaagttctagctggtctgtcaaaatataatatagacattagatctagctggtatgtcataatataatagaggcagtagatctagctggtctgtcataatataatagagacagtatatctagctggtctggcataatatgatagagacagtagatctatctggtctgtcctattataatagagacagtagatctagctggtctgtcataacataatagagacagtagatatagctggtctgccataatataattgagacaggaGACCTAGCTCGTCTCTCattatataaaagaggcagtagatctagctggtctgtcataatataattgagaaggtagatatagctggtctgcaatactataattgagacagtagatctagctggtctgtcataatttcatagagacagtaaatctagctggtctttcttagtataatagaaacagtagatctagctggtctgtgataatatagtagagacagtagatctagctggtctgtcataatagaaaagaggcagtaaatctagctggtcattcataatataattgtgacagtagttctagctcgtctgccataatataattgagacaggaGACCTAGCTCGTCTCTCattatataaaagaggcagtagatctagctggtctgtcataatataattgagaaagtagatatagctggtctgcaATACtctaattgagacagtagatctagctggtctgtcataatttcatagagacagtaaatctagctggtctttcttagtataatagaaacagtagatctagctggtctgtgattatatagtagagacagtagatctagctggtctgtcataatagaaaagaggcagtaaatctagctggtcattcataatataattgtgacagtagttctagctcgtctgccataatataattgagacaggaGACCTAGCTCGTCTCTCattatataaaagaggcagtagatctagctggtctgtcataatataattgagaaagtagatatagctggtctgcaATACtctaattgagacagtagatctagctggtctgtcataatttcatagagacagtaaatctagctggtctttcttagtataatagaaacagtagatctagctggtctgtgataatatagtagagacagtagatctagctgttctgtcataatataaaatagacagcagatctagctggtctgtcataatataataaatacatgctctagcttgtctgttataatataaaagagacagtagatgtagctggtctgtcataaaataattgagacagtagatctagctggtgtgtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2446374 lncRNA downstream 6048 43529263 ~ 43557613 (-) False G2138897
TU2446381 lncRNA downstream 10998 43546758 ~ 43552663 (-) True G2138902
TU2446382 lncRNA downstream 16195 43541994 ~ 43547466 (-) True G2138903
TU2446389 lncRNA downstream 22142 43538953 ~ 43541519 (-) True G2138909
TU2446361 lncRNA downstream 57740 43504126 ~ 43505921 (-) True G2138888
TU2446377 lncRNA upstream 989 43566292 ~ 43567696 (-) True G2138898
XM_036966530.1 mRNA downstream 165627 43343531 ~ 43398034 (-) False emilin2a
XM_036966351.1 mRNA downstream 486201 43041222 ~ 43077460 (-) True LOC118944838
XM_036967031.1 mRNA downstream 576302 42973355 ~ 42987359 (-) True LOC110509179
XM_036967030.1 mRNA downstream 604253 42877496 ~ 42959408 (-) True LOC110508296
XM_036967029.1 mRNA downstream 790824 42746681 ~ 42772837 (-) True LOC110509177
TU2446193 other downstream 188103 43374747 ~ 43375558 (-) True emilin2a
TU2445575 other downstream 1212209 42349216 ~ 42351452 (-) True G2138294
TU2444991 other downstream 1336696 42220922 ~ 42226965 (-) False G2137814
TU2444984 other downstream 1337297 42220922 ~ 42226364 (-) False G2137814
TU2444782 other downstream 1749460 41810795 ~ 41814201 (-) True G2137648

Expression Profile