RNA id: XM_036967676.1


Basic Information

Item Value
RNA id XM_036967676.1
length 5379
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC110509291
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 536258 ~ 614583 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATAATTTCACTGCCTTCGAGTTGGGCTTGTGTTGTGTATCACTTTGGTGAATTAATGTCGGCCTGTGGGTGAATGCGATTGTGTTTGCGTGGAGGGTTGACAAGAAATACTTGGTAAAATGTATGCAGAAGAGTCGAATTGGTCATGGGACGAACGAACTATCTTTTCTTGTTATTGTTGACGGATGCTGACTCCTGGAAATCACCGATTAGCGAATAAATGTGTGCATTAAATTGTTTGGGGAATGGTGTAGTTTATTGTAATTTCCAAATCCCATAACCAACACGGAGTAAAGAAAAGCCACATCTTTACAAAGCATTTATTCTGTGTAGGGTCCGAATCAACACGGGGTCATCAGAGATACTGAGCCAACAATATCAAGGACTTCCAAGCTCCTGATTGAAAACGACATTTTTACTTTGTTTCATTTCCTATCCTTTTTGTTGGTCAATCCCAAAGGTTTAATTTAGGAATATTTCTGCTGCATAAACCTATCAATTATTGACATATTTCAAGTTCACCAGTTCAACCATCTCAATGGCGTTTTTAATGAAAAAGAAGAAGTTCAAGTTTCAAATCAATTTTACATTGGAGGAGCTCACAGCCGTGCCGTTTGTCAATGGGGTACTTTTCTGCAAGATCCGATTGTTGGATGGTGGGGACTTTGCCATCTCATCATCCAGGGAGGAGGTTCAGCAGAACTGTGTTCGTTGGAAAAAGAAGTTCTCCTTCGTCTGTAAAATGAGTGCCAATCCTACCACTGGAGTCCTGGACCGATCCATCTGCAGGGTTTCTGTACGCAAGGAGCTTAAAGGAGGAAAGGCGTTTTCAAAGCTGGGCTTTGCTGACCTCAACATGGCAGAGTTTGCTGGCTCAGGCTCCACCGTGCACTGCTGTATTCTCGAGGGCTACGATACCAAGAACACTCGACAGGATAACTCCATTCTCAagGTTACTATTGGAATCACCCTTTTGTCAGGGGATCCCTGCTTTAAAACGCCCCCCAGCACGGCCAAGTCCGTCTCTATCCCGGGCCAGGACCCCTCCCTGCAGCTGGACTGTAAGGGCGAGGGCACCAATGCCAACTATAACCCTCCCCCAGGGGCCGTCACCAGGACATCATCAGGACGGCCCCTCAAACCCAGACTCCCCTCAGCTCCTCTCAACTCTGGTCTACCTAGGGAGCAGTTGGAGCAGAACCTGTCCAGCCCAGATGAAGTGTTTCACACAGGACACTCCCGGAACTCCAGCTACGCCAGCCAGCAGAGcaagatatcaggCTACAGCACGGAACACTCTCGCTCCTCCAGCTTGACAGACCTCACCCACCGCCGCAATGCCTCAACCAGCAGCAGTACCTCCGGGAGCCTGGGCACCCCTACCCAGACCCCCCACGTCTTCGCCCACCCCCTCGCAGCAGACCCCCAGACACCAGGAGAGCCAGGCACCAAGCCTCAGAGACCCATACGGCCCCTACGCCCTGTCCTGCTCTCCAATAGACCCTCCAGGAGGAAGAAGGACTCTGTGGAAAGCCACCCCACCTGGGTGGACGACACGCGCATCGACGCCGACGACATTGTGGACAAGATCATCCAGAGCCAGAactttgctgatgtcaacaacCATAAAGAAGacagcaaCCTCAGACTGTTTGTCAGCAAAGATGGGACTACAGCCCTGAGTGGGATACAACTGGGAAACAGTGTGATTGCTGGTGTCTTTGAGCCAGTAGTGATCGAGAGCCACTAGCGATGAAGATTGATGGATGTCAAATCActctacccccctccctccatctcactcatTCCCTCAGCTGGTGGGAAAAGGGTACATGAGGGACACTGCAGACAACTCCACTGTTTtgaactgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgcacacatGACTGGCTGCCTTTTGATCTACACCATTTCAACAAACACCACTAGACAACAGATGTAACCCTTTAAGCAGATGTTTAAGCAGATGTTTAAGGTGATGTAGGTGGGAGGTGCGACGTATGAATAATCCATTAATGTAGAAAAGCTTTTAAAATCAGGACGACCCCTCAAACCCAGACTCCCCTCAGCTCCTCTCAACTCTGGTATGACAGTGAATCACATCTGATTGCTGAAAAtttattaaaggggcaatctgcagttcgaACAAAAACAAAGCCCAAATATTTAAAATCAATGCTTTCGTCTGGGGGCCGTAGGTGTAAAGTGTGCAAAGTACTtgatagagagagaaatgggaaacCATCGCATCGTGGAAATTGTAGTGCAACACTGAAAACCAGGAAAAGGCATTGGAGTCAAATGTGGCTGCCTCAAGTTGGAACGTTATGGTTTACCCCATGTGTATCATTTCGTGTATCAATTCAAATGAGGGGAGCGTGCTAAAACCAAGAAAGATGTGGAGAAATTGAACAGACCATTTGAACTAGGCTTCAATGGGTGGTTTTCAATGTGAAATGTTCTATTTGCGATGAACCCCTTGCAATCCTCAGattccagaacaacagaacaacagcacTAGACCTGGGGCTAAAGTTACTGTATAGCCCAAATAACCCATGTCATAGAATTATAAAGTTATAGAATATATGCATATAAATATGTCATATGACAATAGATAATATGTATATACGGACCTGAGAAAGAGAAAGGTATACACATGTGGCTGGCCATATGCAACTGTACATACTGCCATTGTCTATGTGTGATTCATCAATTACTCTCGGTAAATGCAGGTAGGGTTGGTAATCGATGAGTCTAGTCTACGCCCTTGGTCCTCCTCCCTTGGCTCTTTTACATAGTCTGCTTTACGTCCTTAAAGTAAAATACTATCCTGAAGTTCACCAGCTGGCTTGGTGTCTATACTGTAAAAGTAGGAAAATCAGACTCAACTTTTCTTGGTTTCTCTATTTTTGTTGTTAGTCATGTGTCTGTCTCAGGATATATGGATGGTGGGTTACCCTGTACTGTTTTGTCCCTGGCCTGTCATGTATGTCACACCTAATTGATTTGAGTCACCACGCCCATGACATCAGTCCGTGTTCTCAAGGACAGGAGCTGTCCGTTACCAGGTTACACCCATCCAAATCACTTTTGGATTGGTGTTCTCAACAAACCAATGTTTACAGTGTGATGCAAAAGGAAACTCGACCGCATATTATTTCAAACTTGCTTTCTCGCTGCAAGGGAAGAGTATTGTTTTTTAAACCTGGTTACTGATTTTGATTGAATTGGGGCCCATAATATGTTGTTAAGTTGCTGAAGTGGGGTACTaaagttagccagctaacatCATAGTCCTTCTTTGTGAGGTACTTTCTATGTGGCCTTGGCCACATGAGCTGTCCAACTGTTGCCGTTCCACTTAAGTCGCAATATCACCCGAGATGTTGACTCGTTATCAAGCAAAATCAACTAACAAGTGAATAAGGGCTGTAATGATACAACTGACAGTATCTGGTCATCTTCTCCAAAATGACCAAGCTATTCTATTTCCTGGGGGGAAATGTCATTTCATTTCTGTCGCCCCCGGATCTTGAATGTGTTAGAAGAACATTGCATTGTAGGTATGGTGTAGTCAGAGCCAATCAGAGCCAATGAGTCAGTCTCATGCAGCTGCCCCATGTGGCACAATGCACCTGGTGTGCACTGGCTTAACAACGGAGGGTTTTCAGAAGAAGCTCCACCCTCATCCCCAAATGACAATGTCCTTTTGTATgcgtgtttgtgcctgtgtgcctgCGTACGTCTttgtgggggagggagagggaacgaAAATGTGggcgtttgtgtgtgtacgtctgcatattgtgcgtgtgtatgtccgtgtgtgcgtgtgtgtgtctgtctgcacatgcatgtttgtgcatgtgtgtatgtctgtgctgCAAACGAATGTGCGTGTGCAAGTCGAATTGTTTATGTGTGCTGAAATCAGAACAGCTTGCCACTCGCCTGTCTTACGGTTCTTGACCCCtgagtatcctttcagttgatcTGAGTCAACTCAGCAGGAATATGGACCTAATGCATAGCCTGTCTTACGGTTCTTGACCCCtgagtatcctttcagttgatcTGAGTCAACTCAGCAGGAATATGGACCTAATGCATAGCCTGTCTTACGGTTCTTGACCCCtgagtatcctttcagttgatcTGAGTCAACTCAGCAGGAATATGGACCTAATGCATAGCCTGTCTTACGGTTCTTGACCCCtgagtatcctttcagttgatcTGAGTCAACTCAGCAGGAATATGGACCTAATGCATAGCCTGTCTTACGGTTCTTGACCCCtgagtatcctttcagttgatcTGAGTCAACTCAGCAGGAATATGGACCTAATGCATCGCCTGTCTTACGGTTCTTGACCCCtgagtatcctttcagttgatcTGAGTCAACTCAGCAGGAATATGGACCTAATGCATAGCCTGTCTTACGGTTCTTGACCCCtgagtatcctttcagttgatcTGAGTCAACTCAGCAGGAATATGGACCTAATGCATCGCCTGTCTTACGGTTCTTGACCCCtgagtatcctttcagttgatcTGAGTCAACTCAGCAGGAATATGGACCTAATGCATAGCCTGTCTTACGGTTCTTGACCCCtgagtatcctttcagttgatcTGAGTCAACTCAGCAGGAATACGGACCTAATGCATCGCCTGTCTTACGGTTCTTGACCCCtgagtatcctttcagttgatcTGAGTCAACTCAGCAGGAATATGGACCTAATGCATCGCCTGTCTTACGGTTCTTGACCCCtgagtatcctttcagttgatcTGAGTCAACTCAGCAGGAATATGGACCTAATGCATAGCCTGTCTTACGGTTCTTGACCCCtgagtatcctttcagttgatcTGAGTCAACTCAGCAGGAATATGGACCTAATGCATCGCCTGTCTTACGGTTCTTGACCCCtgagtatcctttcagttgatcTGAGTCAACTCAGCAGGAATACGGACCTAATGCATAGCCTGTCTTTTCGCCCTTAGTCTGCTTAATTAAAATGTCTTTCAAAGGAAAAAGTGACAATGGGCTTTTATCTACCCACATGTAGCATCTACATACTGTGTCTTCCTAACAAGGATGTTTTATTTACACCACACCGGACATTCATAGCGTACTGAGATTTGACATTCAGAGGCATAGAGAGAAAATGTCCAAAATCTTGGCCCTTGAAAAATaacatttgtatttttgtttcactctccaatgtgcttttgtttttctttcactctccaatgtgcttttgtttcactctccaatgtgtttttgtttcactctccaatgtgcttttgtttcactc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2446889 lncRNA upstream 5835 458877 ~ 531187 (+) True G2139328
TU2446839 lncRNA upstream 158089 378711 ~ 378933 (+) True G2139281
TU2446824 lncRNA upstream 176700 352002 ~ 360322 (+) False G2139267
TU2446825 lncRNA upstream 181808 352002 ~ 355214 (+) True G2139267
TU2446748 lncRNA upstream 204108 330842 ~ 332914 (+) True G2139198
TU2446919 lncRNA downstream 5210 619793 ~ 628797 (+) False LOC100305272
TU2446920 lncRNA downstream 5210 619793 ~ 629076 (+) False LOC100305272
TU2446922 lncRNA downstream 5210 619793 ~ 629216 (+) True LOC100305272
TU2447019 lncRNA downstream 103720 718303 ~ 718546 (+) True G2139436
TU2447020 lncRNA downstream 106028 720611 ~ 720927 (+) True G2139437
XM_036968301.1 mRNA upstream 6924 528067 ~ 530098 (+) True LOC110509495
XM_021590385.2 mRNA upstream 92040 438137 ~ 444982 (+) True LOC110509491
XM_021590381.2 mRNA upstream 245996 287196 ~ 291026 (+) True LOC110509488
XM_036967766.1 mRNA upstream 387764 131779 ~ 149258 (+) False LOC110509486
XR_005040409.1 mRNA upstream 430223 71933 ~ 106799 (+) False LOC110509485
NM_001165177.1 mRNA downstream 5206 619789 ~ 628997 (+) False LOC100305272
XM_036968184.1 mRNA downstream 17438 632021 ~ 648425 (+) False LOC110509496
XM_021590391.2 mRNA downstream 17438 632021 ~ 650126 (+) True LOC110509496
XM_021590393.2 mRNA downstream 77158 691741 ~ 694348 (+) True LOC110509498
XM_021590394.2 mRNA downstream 79944 694527 ~ 703826 (+) True LOC110509499
TU2446755 other upstream 211974 324366 ~ 325048 (+) True G2139202
TU2446685 other upstream 378189 158015 ~ 158833 (+) True G2139145
TU2446630 other upstream 387769 142248 ~ 149253 (+) True LOC110509486
TU2446627 other upstream 387856 142248 ~ 149166 (+) False LOC110509486
TU2447110 other downstream 237666 852249 ~ 853787 (+) True G2139520
TU2448098 other downstream 791631 1406214 ~ 1429734 (+) True LOC110509506
TU2448290 other downstream 957964 1572547 ~ 1578559 (+) True LOC110509295
TU2448420 other downstream 1323801 1938384 ~ 1940991 (+) True LOC110509554
TU2450179 other downstream 2468634 3083217 ~ 3083571 (+) True G2142277

Expression Profile