RNA id: TU2446922


Basic Information

Item Value
RNA id TU2446922
length 1796
lncRNA type sense_over
GC content 0.40
exon number 4
gene id LOC100305272
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 619789 ~ 629216 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGATTCATACGCGGAAACAACACGTCAGAAATGGCCACAGGGGCAGACCAAGCAGTTGGCATGGGCCTTGTTGGCTTCAGCCTCCTGTTGTTTACATACTACACAATATGGGTAATCATTCTGCCGTTCGTGGACAGCGATCATGTGGCCCACCAGTATTTTCTTCAACGGGAGTATTCTGTCATTCTACCTGGGATCGCAGCATTGATACTGCTGCTCAGTGTAGGCACCTTCATTGGCGTGGTCACCTGGAAGAATCGCAAGCCTAAGAAGGTGGACTAAGAGGGATGGTATCACAGAGGTTAGACGGTTGAGGATGTAGAGCTAGAACTAAAGCTTCCATAGAACCTCCCTGGTTCCAACATCTTTCCAACAGTTCAGCTGAAGAAACTAAAAATAAAGTCTGGACTGCTTCTCTGGGACAGCTGATGAAAACATCTAATGACTGAAAGACATAAGATTTGAAGAGCTGCGGTCCACAACCTTCTATCCCTTATCTCCATTCAGACCCACTATGTGAAATCCTTAACCTTGCCGTTGGCAATGCATGGCTCCGGATGCTATATTTGTCCTCAAGGTGCATTGTCATTTTGCCAGAGATTAAAATCAATGAGTCGGTATTCACTGTTACTGTATGTGGTCAGAACTAGATAAAACCTGGCTTCATAATGTGGAGGGGATAAAGATTTGCTGATTTTGTTGAGTGTACTATATCAGATCTGATCAAAGTTTCACTTTGGCATCCCTTTTCATCACATCTTGGATTTAGTTTTCAGGCACTGTTTTACATCTCAATTTAAGATAAATTGGAGTGGTCACCCTTAAAGGCAGTGTTGTGTTCGAGACCACtgagactgagtcaagaccggGAGGGTGACAAGGGGTCCAAGACTGAGACCAGAAGGATGcgagtccaattcaagaccatgattgAAATTCTGTCAAAAACTCATCATCTGGTGTGTGGAACTGTGTGTTTTATTGCTGTGCTTGCTGTTAGCCATCTCTTTGAAAATAACTTGTGTGTGAAACATTGTGGTGGTTTAAAGTGGAACtaacagcattttagcaacataaCATTTGATTAAAATCTGTTCAGATACACACCCAGGAATAATATGACACTTTAAAAAAACAATGTATCCTGAAAAGCGACCACTTAGATATGGTCcttttcataaattcttagaatgtttgggaattctGTATACTAAGGCATTTGAGAAAATTCTATAGCAATGTAGATTGGGAAAGCaaaagtcagtcactcacctactcttccaatgacatgacatcctcctagcagctagctatctagctaatgtTACTGTGTTTTTAACTTGATACATAAAGATAcatgctagcctattagccacgttatgactgacttgtggtCATTGCCCTTGCTCGTTTGATTGTATTGAAATTCCTCGCCTTAGTTACATTCATATGTTTTTGTCCAGATTATTGAGTCTTTGAAACTGAAACCGTACATCCTGAATGGAGACACAGAACTATGTACAAGGCCAGCTGTGATGCACAATCTGATAGCAATATAAatttattggtgaattatattatgGTATGGTACGTTGagtcaaatataacctatttttaaaacctcttataaagatggttttgtagcataaactgggaattttatatttttgacagattttatgattgtctgtttcatatctgcgaagtagttaaaacgctgtcagtGCCTCTTTAGGTCACTGGTTACTTTGTATGCAAACATGAAATGTtttttgcaatgggaagtaatagttGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2446933 lncRNA upstream 16860 602244 ~ 602933 (+) True G2139362
TU2446889 lncRNA upstream 88606 458877 ~ 531187 (+) True G2139328
TU2446839 lncRNA upstream 240860 378711 ~ 378933 (+) True G2139281
TU2446824 lncRNA upstream 259471 352002 ~ 360322 (+) False G2139267
TU2447019 lncRNA downstream 89087 718303 ~ 718546 (+) True G2139436
TU2447020 lncRNA downstream 91395 720611 ~ 720927 (+) True G2139437
TU2447021 lncRNA downstream 93867 723083 ~ 723874 (+) True G2139438
TU2447022 lncRNA downstream 94822 724038 ~ 724393 (+) True G2139439
TU2447099 lncRNA downstream 197571 826787 ~ 827022 (+) True G2139512
XM_036967675.1 mRNA upstream 5210 536258 ~ 614583 (+) False LOC110509291
XM_036967676.1 mRNA upstream 5210 537022 ~ 614583 (+) False LOC110509291
XM_036968301.1 mRNA upstream 89695 528067 ~ 530098 (+) True LOC110509495
XM_021590385.2 mRNA upstream 174811 438137 ~ 444982 (+) True LOC110509491
XM_021590381.2 mRNA upstream 328767 287196 ~ 291026 (+) True LOC110509488
XM_036968184.1 mRNA downstream 2805 632021 ~ 648425 (+) False LOC110509496
XM_021590391.2 mRNA downstream 2805 632021 ~ 650126 (+) True LOC110509496
XM_021590393.2 mRNA downstream 62525 691741 ~ 694348 (+) True LOC110509498
XM_021590394.2 mRNA downstream 65311 694527 ~ 703826 (+) True LOC110509499
XM_021590403.2 mRNA downstream 206612 835828 ~ 844013 (+) True LOC110509503
TU2446928 other upstream 28989 536951 ~ 590804 (+) True LOC110509291
TU2446755 other upstream 294745 324366 ~ 325048 (+) True G2139202
TU2446685 other upstream 460960 158015 ~ 158833 (+) True G2139145
TU2446630 other upstream 470540 142248 ~ 149253 (+) True LOC110509486
TU2446627 other upstream 470627 142248 ~ 149166 (+) False LOC110509486
TU2447110 other downstream 223033 852249 ~ 853787 (+) True G2139520
TU2448098 other downstream 776998 1406214 ~ 1429734 (+) True LOC110509506
TU2448290 other downstream 943331 1572547 ~ 1578559 (+) True LOC110509295
TU2448420 other downstream 1309168 1938384 ~ 1940991 (+) True LOC110509554
TU2450179 other downstream 2454001 3083217 ~ 3083571 (+) True G2142277

Expression Profile