RNA id: XM_021590394.2


Basic Information

Item Value
RNA id XM_021590394.2
length 2438
RNA type mRNA
GC content 0.50
exon number 10
gene id LOC110509499
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 694527 ~ 703826 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCCAATCAAACTGTTTCCCTTGTCAGCGCATTTTCGGGACAAATTGGAGAAAATCCCTGCATATTGCCATGCAAAATGTCAGAACTGTCACAGCAGAATCAAACATTTTTGTCTGCAAATATCACATAAAATCCCCCTGAAGTCCTGGAGGGACtgaatgtgtgtacagtatatgcgtGTTTACAAAAGGTCACAAATGCAGACTCAACATGTACACCACAAACTAAAAAGACAAAAAGAGGTCTCCTGCTTCTCTAACTGTATCCTAATTTCATGCTTTCCCCTAGGGTGTGGAGGAGCACCAGAGCCTTTTGATGGAGAAGCAGGAGGAGCTGGCCCAGCTCCAAGGGGAGCACCAAACCAAGCTGCTGGAGGCCCAGAAGCTGCAGCGCTCCCTGGGCAGGCAGAAGCAGGAGCTGTCTGACCTGCAGCAGGCCAAGGAGCAGCTGGACCAAGAGCTGGAGGAGTTGCAGCAGCAGAAGGTCGACAAGGCCCTCAATGAGGTGCAGAACCAGCTGAAGAAACTGACCGGGGAGCCGGGCGAGAGGGAGAGCAGCCTGAAGCAGCAGTACCAGGAGCTGCTGGAGCAGACCAAGAGGAGGCTGCAGGGCCATGAGGTCACCATCCAGCGCCTCACCACTTGCCTGACCGACAAGGAGCAGCAGCTGCAGgaGTACATGAACATAACGAGAGACATGGAACAGAGCAGAAGTCCTGGGGGAAGCGACACCATGCTGTCGAAGCTACGAGAACAactgaaacagaaagagaaggcTCTGGAGGAAGCGCTGGATGATAAGTTTGCGGCTCTAGAAGAGAAAGACAATGAGATCCACCAGCTGCACCTGTCACTCAGGGAGAAGGCGAGGGACCTGGAGAGACTCAACAAACTGCTGTCTTACAATGAGGACACCATCAATAGTTTTGACACGTTGATAAAGGAGAAGGACGTGGAGCTACAGTACCTTGTGAACATGCTGAAAAACCTGCAGCAGGCCAAGCAGGACGTGGAGGACAACCTGAACTGGGCCTGCAAGGAGAAGGATGCCATCATTAGCCAGCTGCAGCTCTGCCTGGAGTGCAAGACCAAGGACATGGAGGAGATGGCGAATGCCCTGCTtagtcagtcccagtctcaggccTGTGACCTTGCAGAGCAGATGGGTCAGAGGTTAAAGGTGACAGAGGCCATGCTGGCGGAGGCAGTCAAGGCCCGGGAGAGGCTGGTGGAGAACAACAAGAGCACCGTGGAGGGCCTGCTGTCCACCATCAGCAGCAACGACCAGCTGCTcaatGAGTCAGCGGAGCACTATAACCGCACACTGTCTGAGCGCACCCAGGAGATCCAGGAGCTGAAGCGGCAGCTGTTTGTCCGGCAGCAGCAGCTGGCCTTGGCAGAGAAACAGAGTTCTGAGGCAACACAGGAGGGTTACCTGGAGACTGCCGAGCTCAGGGCCCTGCTGACGGAGAAGGACTCCATCATCAACAAACTTCTGGAGCGTgggcaggagagagaccagttcCTGGCTGAGTTAGGGCAGAAGGAGCCTGCACCGCCCCAGGTGATGGAGATCAGACAGACCATCAAAGTTCTGCaggagaggctggaggagagggaagCGCAGCTCTCCAAGAAGAACAACGAGGACAACATGGAGAAGGTCCCTCTCACTAAGAATACTCTGGTCATCCTGAAGAAGGAGCTAGCTCACAAGACTGATGCTCTCAAGAAGGCTCTGAAGAGGGAGAATGACCTCAAAGTGAACTAAAAGAACACACGAACAACCCTGCTCATTCAAGATGTCCCTGGCTGATCTCGAGTCAGTGTTGTCAGAGCTGAAGGAGCGTATCGAGGTCCAGGCGGTCAGTATAGACACCCTCACCACCACCCTTGGGACCAAAGACAAGATTATAAATGAGTGGACGGCCAGTGGCATCTTCACACACTGCTACTAAtcaacacacactcatacacacattcAAACAGGCTCATTAGGTTACCTGGTGCCATTTGGGTTCACGGGTAGCTTTCATAGGGTTAATCCATTTGACTAACCTTGAACTGAACTTATCCATCACCACCTGTTCTACTCTTGAGCGTGGCTTTAAAGTTGAAACCATGTATTGCATTCGTTGTAAATTGTAAAAGGAAATTGGGTGAACATGTCTGGGCAATACATTTACTTCAATACGTTTGTTTTTTCAACCCTTTAAGGGCACGTTTTAATTTGCTGTAAGTTTCCCTCAGTCTCTGCTatagtgcctttagaaagtattcataccccttcactttttccacattttgttgttgcagCCTGAATCTAAATTGATTAAAGTGAGATTTTGTGTTAtcggcctacacacaatacccctataatgtcaaagtggaattatgttcttagaaatgtttactaattAATTAAAAAGGAAaaacaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2446922 lncRNA upstream 65311 619793 ~ 629216 (+) True LOC100305272
TU2446920 lncRNA upstream 65451 619793 ~ 629076 (+) False LOC100305272
TU2446919 lncRNA upstream 65730 619793 ~ 628797 (+) False LOC100305272
TU2446933 lncRNA upstream 91594 602244 ~ 602933 (+) True G2139362
TU2446889 lncRNA upstream 163340 458877 ~ 531187 (+) True G2139328
TU2447019 lncRNA downstream 14477 718303 ~ 718546 (+) True G2139436
TU2447020 lncRNA downstream 16785 720611 ~ 720927 (+) True G2139437
TU2447021 lncRNA downstream 19257 723083 ~ 723874 (+) True G2139438
TU2447022 lncRNA downstream 20212 724038 ~ 724393 (+) True G2139439
TU2447099 lncRNA downstream 122961 826787 ~ 827022 (+) True G2139512
XM_021590393.2 mRNA upstream 179 691741 ~ 694348 (+) True LOC110509498
XM_021590391.2 mRNA upstream 44401 632021 ~ 650126 (+) True LOC110509496
XM_036968184.1 mRNA upstream 46102 632021 ~ 648425 (+) False LOC110509496
NM_001165177.1 mRNA upstream 65530 619789 ~ 628997 (+) False LOC100305272
XM_036967675.1 mRNA upstream 79944 536258 ~ 614583 (+) False LOC110509291
XM_021590403.2 mRNA downstream 132002 835828 ~ 844013 (+) True LOC110509503
XM_036967213.1 mRNA downstream 567670 1271496 ~ 1429741 (+) False LOC110509506
XM_021590410.2 mRNA downstream 815590 1519416 ~ 1532574 (+) False LOC110509509
XM_021590412.2 mRNA downstream 815590 1519416 ~ 1532574 (+) False LOC110509509
XM_021590413.2 mRNA downstream 815590 1519416 ~ 1532574 (+) False LOC110509509
TU2446928 other upstream 103723 536951 ~ 590804 (+) True LOC110509291
TU2446755 other upstream 369479 324366 ~ 325048 (+) True G2139202
TU2446685 other upstream 535694 158015 ~ 158833 (+) True G2139145
TU2446630 other upstream 545274 142248 ~ 149253 (+) True LOC110509486
TU2446627 other upstream 545361 142248 ~ 149166 (+) False LOC110509486
TU2447110 other downstream 148423 852249 ~ 853787 (+) True G2139520
TU2448098 other downstream 702388 1406214 ~ 1429734 (+) True LOC110509506
TU2448290 other downstream 868721 1572547 ~ 1578559 (+) True LOC110509295
TU2448420 other downstream 1234558 1938384 ~ 1940991 (+) True LOC110509554
TU2450179 other downstream 2379391 3083217 ~ 3083571 (+) True G2142277

Expression Profile