RNA id: TCONS_00055822



Basic Information


Item Value
RNA id TCONS_00055822
length 2872
RNA type mRNA
GC content 0.36
exon number 10
gene id XLOC_028806
representative True

Chromosome Information


Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 26082530 ~ 26107841 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ATGAATATGGCTTCGAACTACCAAGAGGATTCCGCTGAAGGCGGCGATCAGCTTTCTGGTGAGAGTGGCTCAGATTTCAGTGACACTGACACAGACTCTGATGCATccactgattctgattctgactCTGAAGATGCTCCACAAACCCCTAACAAGCGTAATGTTTGCAAGTATTACAACCGTGGTCAGTGCCGTTACGGGGAAAAGTGCAGGGACGAGCATGTCTGCAGCAACTTTCTGAACAACTCATGCAAATATGGCACTGGATGTCGACTCAACCACAATCGTCAGAGTCCTTCATCAGCACAAGACAGACAAAAAAGAAGCAGACGCTCACCTGCAGAGACAGAGGATGAAGAGTTTGAAGGGCCTTATAGATGGCAGCTGAATACTGGAAAAGGCTGGAAAAACATTTCCAACGATCATATTCTAGAAGCCCAGTATTCACTTCCTAACACCAAAGGAATCAAGATTTACAACACCTCTGCTGGGGCTGTTTCGATTGACTTCATGAAAATGCGAGTTCTTaagaaaacaaacattaaagtCCGGCGTATGAGCTCAAAAGACACAGAATGGCTGTGGTATTACAGAGGAAACCACTGTTGGTATCGTTATGGCGACAAGGGCAAATCCAGCCCGATTCAGAGCTCAAAACTGGAAACGGAGTTTCAGAAAAACCGCAATGGTTCAGTTAAATTGACCATTGACTCTACACAGTATGAGATATGCTTTAAAGGAATGCGTCAGAGAAATGTATCTACAGGCCATAAAAGGACAATCAGACGCCGCCCTAAATACGAGCCCCCCAACGACGGAGGATTACATGCTTTAAGCTCCAGAATAAAAAACATGATGAGTCCTTCAACAAATAAAACTCCAGAGTGGCAGTTTCATGGGAGAGATCATTGGCATACCTTCAAGAACACgGGTGGTTGTTCAGTCTCAAGTGCTGATATTGAGAGATGTTTCCAAAAGAACCAAACTACAATGAACTTTACTGTGAATGAAGACAACTACACTCTGGATTTTGGAAggATGCGTCAAATAAACCAGAGAACAAAGGCTGAACGGAAAGTCAGACGCGTGTAATGTGGAGCAGAGGCAAAAATCAGGATCCAAATTCACAAATGAACACAAACTTTATATAttgattttgaatttaaatgttagTGATTATGATTTTGAATGTTATATCTGCAATCTTGTTTGGTAAACTGCCTGTGAGAAACAGAAAACCAATGTCTTAATTCATGTTTAATTAGTTTTGATAAATGTTATGAATATTTCTGAAATGCTGCTTGCCATATCAACTTGAAGAAAAGTATGAAACGTTTCTAAATGACGTATAACTTTGCTTTCTGTTTAacttaaagaaaataattttttggcagtgctattatttttattattaccttGTGTCATATCAATATATTCATGGTGGTGaatatttttgctattatttacAGAAAGTACAAATTAGcttgagacaatttttttctagtCTGTTTTACTTTAATGTATAGGCAGATTTGTTACAAGCATCAGGGTTACACGCAAAAAAGTTGTGTAAATATCGACTTGAGCATGCAATATCATCTGCAATAGCATTCACTGCAGCATATTTTACATTACAGTCTGTAAACCTTACAATAAATTAGCATTACATGCAATGACTAAGACAATGTTGAAGGTGAACCTGTTTTTCACACAGGTTTTTTCTTATAAACTGAACTGTTTAATTAGGGCTAATAAAAGCTATGCAAGAGTTTGCGTTTATGGATGTGGTTTTGTGTTCTACTTAAATAAATTGATGATAAATGAGTccttatttaacaaacaaacacattatgtactaatgcttttttttttacgttcTTGAATGTATTCTGATCACCTTGTCATCTTAATTGCATTATATTTActatgtttgaaaataaaaaatgcagactCCTTTGTCTTGGCTTATTTTAAGTGGTTTACAGACCTTACACACAATTAAACAATATCCACACAAAAGTCCTGCTTGATTAGAAGTTTCACGCATTCATTTAATATCAACCTTGATTTTTaaccctttttttttcttaaatacattTTGACAGTGGGTAAGCTATAAAAACTGCAATATTTAATCATTGTGAACAATAGGTTATCTATTTTGTTAGCAAGGCTTCAGTTGCTTTTTTAAGTAATATTTGTGAGTTTGGATTATAAAGCAAAGACTTTCCTGTTGTCTGCTTTTTAAGTGCTGCAGTACTATATTAGTTAAAATTATGTACATATAATTATGTTTGTTAGTTGTTATGGATAAAAGTTTATGTAGCCTATCGATATGCTAAAAATGTGTTTGCCACTTCACCAAAATTAGTAATGCGTCAACATTAACGTTCTTTTTTATCATTGACTAATCAAAGGcagtaataaaaacaacagttttttttgtaGTCATTAGAATCGCTTGTAAAGAAATCCAAACATTTCTTTGATGTCATacttttctgttgttttgttttttgacacGAACATTTTCCCCTGACATGTGTGCCTAAAAGGGGCCTACGTCACGCAACAGTAAAATGGGGGAAAACTAAACACGTATCACTGTCAACAACAGATGTTTAAATACCACCACAGCCCTGCCTTCATGAGCCAGAAAAGAAAGCGAAACTGATTAGCGCTAGCCTACAGAACatgaaaatatgtttatttgacaaGCGTTTTTAATCTGGTATCGACGTATTCTAGGAACTATGTTTGGTGAGTATACCAATCTTTCATTATACATTACAATTTTTATGACATGACCTCTCTGATCGAGAATAGCTGCATGGCAGAAATAATTAGTTTATGTCGCATTCATCATGTCgta

Function


GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8699 Predicted to enable metal ion binding activity.

Ensembl:

ensembl_id ENSDART00000172012

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00055817 lncRNA downstream 88006 26006442 ~ 26007456 (-) True XLOC_028804
TCONS_00058218 lncRNA downstream 598395 25494456 ~ 25497067 (-) True XLOC_028797
TCONS_00055804 lncRNA downstream 616083 25474206 ~ 25479379 (-) True XLOC_028796
TCONS_00055803 lncRNA downstream 617336 25474206 ~ 25478126 (-) False XLOC_028796
TCONS_00058217 lncRNA downstream 847614 25245031 ~ 25247848 (-) True XLOC_028794
TCONS_00055823 lncRNA upstream 19336 26127177 ~ 26147550 (-) True XLOC_028807
TCONS_00057357 lncRNA upstream 143033 26250874 ~ 26252121 (-) True XLOC_028808
TCONS_00057358 lncRNA upstream 309666 26417507 ~ 26422227 (-) True XLOC_028812
TCONS_00058219 lncRNA upstream 644507 26752348 ~ 26765810 (-) True XLOC_028813
TCONS_00058220 lncRNA upstream 731237 26839078 ~ 26839608 (-) True XLOC_028814
TCONS_00055818 mRNA downstream 59692 26021749 ~ 26035770 (-) False XLOC_028805
TCONS_00055819 mRNA downstream 62721 26022595 ~ 26032741 (-) True XLOC_028805
TCONS_00055815 mRNA downstream 183853 25859445 ~ 25911609 (-) False XLOC_028803
TCONS_00055814 mRNA downstream 183853 25859445 ~ 25911609 (-) False XLOC_028803
TCONS_00055816 mRNA downstream 186591 25862576 ~ 25908871 (-) True XLOC_028803
TCONS_00055824 mRNA upstream 195772 26303613 ~ 26322834 (-) False XLOC_028809
TCONS_00055825 mRNA upstream 206177 26314018 ~ 26322836 (-) True XLOC_028809
TCONS_00055826 mRNA upstream 283010 26390851 ~ 26413391 (-) True XLOC_028810
TCONS_00055828 mRNA upstream 974131 27081972 ~ 27099224 (-) False XLOC_028815
TCONS_00055830 mRNA upstream 1004558 27112399 ~ 27129697 (-) False XLOC_028816
TCONS_00055813 other downstream 254560 25840786 ~ 25840902 (-) True XLOC_028802
TCONS_00055802 other downstream 616467 25474206 ~ 25478995 (-) False XLOC_028796
TCONS_00055780 other downstream 2341191 23746043 ~ 23754271 (-) True XLOC_028783
TCONS_00055776 other downstream 2643531 23451817 ~ 23451931 (-) True XLOC_028782
TCONS_00055774 other downstream 2676007 23419320 ~ 23419455 (-) True XLOC_028780
TCONS_00055827 other upstream 299305 26407146 ~ 26407263 (-) True XLOC_028811
TCONS_00055829 other upstream 980530 27088371 ~ 27099285 (-) True XLOC_028815
TCONS_00055832 other upstream 1033338 27141179 ~ 27141303 (-) True XLOC_028817
TCONS_00055849 other upstream 2324490 28432331 ~ 28432445 (-) True XLOC_028824
TCONS_00055850 other upstream 2434180 28542021 ~ 28542135 (-) True XLOC_028825

Expression Profile


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