RNA id: TCONS_00055825


Basic Information

Item Value
RNA id TCONS_00055825
length 2696
RNA type mRNA
GC content 0.46
exon number 3
gene id XLOC_028809
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 26303613 ~ 26322836 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTGGCGGAGCTGAAGACGTGCGTTAAGAGTGATGGAGGTACAAGATCTCTGGATCCCCTATAAAAACCCCTAAGATTTCTCCCGTTGGGCCAGACATATATGTAGGATTCCCGcgatattaataacaataacaaactcAGCCATTTGCAGAACAGGGAATGAGAGGAGGATTTGATGCACGCGTGAAAATCGGATGCCGCACCGCCGCGCGATGGAAATAACAGGATAACGGGATCCAAGCGGCTTTTTTCTACTGATGGAAGCGGCACCAAAATAAACGGGCCAGTTGCGagcacgtgttttttttttttttttttttttttgactaacaGTTAGTCGGTTTGTGGCTTTTTTTCTTGCAATACATCGGCGGGATGGTGTCTTTGAGATGCCACAGGAGCAAGTATATTTGGGCCACTCTGGGGGTGCTGGCGTTGTTGTGGCTGTACATCTTCCCCGTATACAGGATACCCAGCGACAAGGAAATGGTGGAGGAGGTTCTGCGGCAAGGACAGACATGGAGCAGGAACCAGACCGCGGTGGAACTGTACAGgaaGCTGCTGACAGATTGCTGTAACCCAAAGAGGATGTTTGCGGTTACTAAGGAGAATTCGCCATTAGGCAAAGTCTTGTGGTATGATGGTGAATTCTACCACTATCACACAGTCACCAATGAGACCTACCCCATCTTTGTACAGgATACACCATTGCAGCTTCCTCTAAAGAGGTGTTCTGTTGTGGGTAATGGAGGGGTGCTGAAACATAGTGGCTGTGGAAATGAAATTGACCGAGCTGACTTTATCAtgaggtgagatttttttttcatgttaatgAATTCAATTGTTCAGTAAAGGGCTGGTCAGTTAGGATTACAGGGATCTTTATATGAGCTCTGTGTGATTTTTCTCTTTTCAGGCAGATATTTCTGATATGCAAGAAGAAATAGAAGCTGGGATTTTTGGGGTTCTCAGGTTAGATGTGGGCCAGGGATGGGCAACTGTGGGTAAACGCTGAAGGGCCACTGTCTTGCTAAGTTCAGCTCCATTGTTAATCAAACACTCCTAATATATAGCCTTTGTCTTTAGGATTGATTGATTTGAGATGGAAAAATGTCTCAATTACAGTGACCTCCTTGAACCAGTGTTGACTACGTCATATCATCTTCCTCTGTGCCCTTTTGATTAAGCCTTAGACTCAAGTGTACTTTTTCAGTTTTTGCAGCTTTCGAATTACACTCACTTGCAGATAATGAAAATTGAAACACAAGGACAACGTTCAGCAAGGCTTTtaggcaacccaagctcattctggaaacgtaggcccgcggacgtttctggagaccgctatttacgtggccggaggtacgtaaggccgcgtttagtttttttcgagcgaacactgcggggcggtgtgacgccgctccacCCCTCCTCTTCctcgcctccgtgtggagggctttcccgatgcaaccagtttgtctgcttaCCTGACGTTAcctgcgtcggcggagcggaggccccggaggaggagccggagccggccgcggggacaacgactgggatcgagtccggggaacagcaggttccggaaatcaggtaagacgaaaaacggaatccgaaaaataaaagcgagaacgcggcgggatccggaaacgcggtcaaaatcgaagacgagggcttttgcttttttttttttctgaacggcTTTTGCGacccgtcgctcgggtttagggaaggagggggaGGAGGAGGAACAGGAGGGCGGCcaagtcggccgatccggcggcttttcgcgcaagaacggcgcgcgctcccgagaggcacccgagacgcgaaaaagcgcgcacagcggcctctcgcggatccgcgaaaacaaacaccgctcgaatacgtacctcccgggacataaatcgtggtccgcagaaacgtccgcggggctacgtttccacaatgagcccgggttgcatttagggtgcttttacacctagacATTTGTTTCAGAACCTTGCATGTTTCTCCAGTTAGCAcgattcgtttggcatatgtgaatccagcaatcacgcTCAGATCTGTGCCAAAACAATCTGTTCGAGAACGCCTGAATGAGGTAGTCTCATCTCAAATGAAActaactctggagcagatcgattgtagtgaaaAAGCAAAAAGAtctgaaccaggctatatcacattGTATTATAGATATGTATTAAGCATATATATCGCTATATAAAGAGAAAGTATATGAGTTGGGagggatgtcattcctactggtaaatgtgcatttcatatcaaatacgaaagtgaaagcatgttaactattaatgagagctgtttatacatcaggaaaattgaccgatcagcagtcttggtttatctgttatctGTATCaacattcaaaataaatgcacagcttttaatgtcttattgctcatcgtcataaattaaaataagaatgcATGACAGATGAACGGGACtttgcaaaataaaccatgaaactctgaTCAATGTGACgagagagtttactcgcacatgacttgCTTTAGCTCTGTTGGTCCGTTTAGAAAATTTGCCATGTGAAAGCAAACCAGATCAAGAGCAAAGTGcaaaattgtaacaattttaatacaTGTTTCGGAAACATAAGAATCaatccacaggtgtgaaagcaccctcagtgaAGATTTGCATGTCAA

Function

GO:

id name namespace
GO:0009311 oligosaccharide metabolic process biological_process
GO:0006486 protein glycosylation biological_process
GO:0006491 N-glycan processing biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0003828 alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity molecular_function
GO:0008373 sialyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051005-1 Predicted to enable alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity. Predicted to be involved in N-glycan processing; oligosaccharide metabolic process; and protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including corpuscles of Stannius; forebrain neural plate; kidney; nervous system; and unfertilized egg. Orthologous to human ST8SIA1 (ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1).

Ensembl:

ensembl_id ENSDART00000161687

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057357 lncRNA downstream 61897 26250874 ~ 26252121 (-) True XLOC_028808
TCONS_00055823 lncRNA downstream 166468 26127177 ~ 26147550 (-) True XLOC_028807
TCONS_00055817 lncRNA downstream 306562 26006442 ~ 26007456 (-) True XLOC_028804
TCONS_00058218 lncRNA downstream 816951 25494456 ~ 25497067 (-) True XLOC_028797
TCONS_00055804 lncRNA downstream 834639 25474206 ~ 25479379 (-) True XLOC_028796
TCONS_00057358 lncRNA upstream 94671 26417507 ~ 26422227 (-) True XLOC_028812
TCONS_00058219 lncRNA upstream 429512 26752348 ~ 26765810 (-) True XLOC_028813
TCONS_00058220 lncRNA upstream 516242 26839078 ~ 26839608 (-) True XLOC_028814
TCONS_00058221 lncRNA upstream 2302033 28624869 ~ 28627715 (-) False XLOC_028826
TCONS_00057359 lncRNA upstream 2302033 28624869 ~ 28628533 (-) False XLOC_028826
TCONS_00055822 mRNA downstream 206177 26095462 ~ 26107841 (-) True XLOC_028806
TCONS_00055821 mRNA downstream 218252 26082943 ~ 26095766 (-) False XLOC_028806
TCONS_00055820 mRNA downstream 218263 26082530 ~ 26095755 (-) False XLOC_028806
TCONS_00055818 mRNA downstream 278248 26021749 ~ 26035770 (-) False XLOC_028805
TCONS_00055826 mRNA upstream 68015 26390851 ~ 26413391 (-) True XLOC_028810
TCONS_00055828 mRNA upstream 759136 27081972 ~ 27099224 (-) False XLOC_028815
TCONS_00055830 mRNA upstream 789563 27112399 ~ 27129697 (-) False XLOC_028816
TCONS_00055831 mRNA upstream 790377 27113213 ~ 27117112 (-) True XLOC_028816
TCONS_00055833 mRNA upstream 929029 27251865 ~ 27301356 (-) False XLOC_028818
TCONS_00055813 other downstream 473116 25840786 ~ 25840902 (-) True XLOC_028802
TCONS_00055802 other downstream 835023 25474206 ~ 25478995 (-) False XLOC_028796
TCONS_00055780 other downstream 2559747 23746043 ~ 23754271 (-) True XLOC_028783
TCONS_00055776 other downstream 2862087 23451817 ~ 23451931 (-) True XLOC_028782
TCONS_00055774 other downstream 2894563 23419320 ~ 23419455 (-) True XLOC_028780
TCONS_00055827 other upstream 84310 26407146 ~ 26407263 (-) True XLOC_028811
TCONS_00055829 other upstream 765535 27088371 ~ 27099285 (-) True XLOC_028815
TCONS_00055832 other upstream 818343 27141179 ~ 27141303 (-) True XLOC_028817
TCONS_00055849 other upstream 2109495 28432331 ~ 28432445 (-) True XLOC_028824
TCONS_00055850 other upstream 2219185 28542021 ~ 28542135 (-) True XLOC_028825

Expression Profile

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