RNA id: XR_005040416.1


Basic Information

Item Value
RNA id XR_005040416.1
length 2811
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC118945302
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 4225423 ~ 4229194 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGAAATTATGTCACTTCCTCGGCAGGAAAAACAACTGTGGTTAGCCTGGCAACGCCAGCAAGGAGAACGCATTAGAAAAAAACACACAGAAGACtccaaaaagagagagagcatttaAAATCAGAAGTGGCAaaggagaggggaaaaaaagaaaaaatacagGAATAGGTATGCAAGGATTAGGGGAGAACGGGCATCTGTATCTCCTCATTCAACAGTCAAAGCATTGCAGAGACGTCAGAATGTGACATCACCTATTAACAGGGCTCTCCTCTTTCACACATCTCTCATTAAAgatatcaaaacaaaatacaaaaatgcaAGGAATCAGAAGAACAAGCAAATCATTGCGAAAGTGACCTCTGTGAATACACTGAAGAAGTATAAACTTCAGAAGACGGTGTTGGGCTTTTCAAATAATGAGAGCGAAGTTGGAAAGGGACCTGTGCTCTTTTTTGATGAGGAAGGGAAGCAGAACAGAAACAGAAATAAAAAGGAAAGTGAAGGATTTTTTTCTCAGTGATGATGTAAGTAGTATAACGACCGGCCGCAAACAAACCATGACACGACTAAAGAACAAAATGCACAAGAGGCTTCTGACTGACAATGAAAAAATCTACACAGAAATGTCCTGCCTGAGGAACTAGGTCAGTTGTCCAATACCTCCTTCTGCCACCTCAGGCCATTTTGGGTTGTTACGCCTAATGACACTGATCGTGAAACTTGTCAGTGCAAAACCCATGAGAATTTACAGTTCATGGCAAATTCTCTTCACAGTCTTGGGCTTTTGTCCACCAAAAACCTTGAGGACATGGTCAACTCAAGTATGTGTGACCTGAAATCGAAGCTATGTGCTTATGGTGAATGTAATGATTGCTTCCTCACCACTCATCCAACTCTGAAACCTCCTGGGAATGTAGAAGTTCCTCTGACACAATGGACCTTGGAGAAGATCCAAAAAAGACGAAGAGAAGTGCTCCATGATAATCGGGAAGAGGGAGGTCACAATAACAGAAACTGAACTGGTCAGTCAGTTTCAAGATAGGCTCGCTAAGTTTTAGGCAACACATCTTTAATATCAAGTGACAATACAAGGCCTATAGGGAGCTTAGGGAGAGTCTGAAGAACAATGAGTGCTAGCTGCACATTAACTTCAGCAAAAACTATTCATGCAAATACAGTCAAGAGATCCAGTTCTTGCATTTTGGGGGATCTCACCAGCAAGCCACTCTCCACACTGGAGTGATCTACACTGCTGCAGACCATCCACCAATTGCTTTTTGCTCCATTTCACCATCACAGAGACATGATCCACCTGCCATTTGGGAACACCTTGATCCGGTTCTTGCCATGTTTAAGCAGAAGTACCCTGAAGTCAGCTTCATTTCTTTACTGGGGGGCCGGCTACACAATACAAGTAGAAAGGGAACTTCTACCTACTTGCCACAGAACCACACAAACAAGGCTTTCAAGAGGTCAACTGGAATTTCTTTGAGGCCAGCCACGGCAAGCGGGCACCAGATGGTATTGGAGATGCTCTCAAGAGATCTGCAGATAGAGCAGTGCACCATTGAAATGATATCCCAGATACACAGGCCCTGTACAATGTCCTAAAAGGTCTTAACTCCTCTGTAGAGATGTTCTTCATTACTGAGAGTGATGTTGAGGCAAGAGCAGAGGTAACCCTCCTTCCtccccatacacacatacagtacatacattgaGTATTGGTTGAGTATTGAAATGTTTAAGGTGTTTGTTACTCTTTATATCTTATCATATGCTAACATAACATTAAGGTGAACTGAATGACATCAACAAATTCTTCTGGCCAAGTACAAAGGAAGATATTTTGATGGACAGATAATTTGTCTGATGCCGGAGCCACTGCCTGTCAATAAACACTCTTTGCAGAGGGAAAACTCCACCTGGAAGTATGTGGAAGAGCATTTGGGGTGAAAggggagagcgagggatagaggaagagcgGGACAGGAATGTGTTTTAATGCTAATTCCAATGATTTTGCACCTGCAATGTATTTTTGTCTTGTTGTTTTTCACAATGAATATATAACTAAATAGCAGTTCCAATGTTGTTACTACATGTATTACTATGTAGATATCTCCTCAGTGTTCAGTATTCAGGTTTCAGGGTTTAATTTATGTTCTGTCCCGTTATAGTTGTCCACCCTGTTATCTTGGCATCTTTTTCAAATGAATTCAGTTACATTGTCAAATATCAAGAATTTGTGTAATGTATTTTAAAGGGTAAGACATGGCCGACACCAGAGAATTATAAACCTGGATAAAATATAATTGATACTTGTCTCAATTTAGAAAGATAAGGTGTAAATTAGATGAAGTTCAGTATAAAACCACACATTGTATACAACATCTGTTATTTCTTTATAATTTGACCAGAACAAATGAACAGGGTTGACAAGGGGACACAATAGCTTTATGAAAACGTAAATATGATTAAAATAGTCCAATGAAAGTAATTAAAGACAGGTAAGTGCATGTCTGTAACAGGGTGGGCATATCTTATGGCTGATTCACTGAAAATGGGTTTGTAATGATCTAACTCTTAAGTGCTGGAGCTTGGCCAACATGTTTTTCTAAAAgtctaatattttattttttatagtaAATCACAAAAGGAATACAAATtctgaaataaaaatgtaaaatgttgcgTGTTCCAAATGTTTTGTGATATTGAcccttgtgtctgtctgtgtggtgagcACATGGCATTAATATTGTCTGTTCAATGTCTCATAAAGCTGTGATTGAGAATAGCCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU2451820 lncRNA downstream 27633 4195175 ~ 4197790 (-) True G2143834
TU2451821 lncRNA downstream 28997 4194829 ~ 4196426 (-) False G2143834
TU2451823 lncRNA downstream 29754 4195362 ~ 4195669 (-) True G2143835
TU2451584 lncRNA downstream 63594 4161602 ~ 4161829 (-) True G2143605
TU2451580 lncRNA downstream 67397 4157805 ~ 4158026 (-) True LOC110509299
TU2451846 lncRNA upstream 98088 4327282 ~ 4327917 (-) False LOC110509531
TU2451845 lncRNA upstream 98229 4327423 ~ 4327917 (-) False LOC110509531
TU2452072 lncRNA upstream 331479 4560673 ~ 4561262 (-) True G2144064
TU2452080 lncRNA upstream 337212 4566406 ~ 4566625 (-) True G2144072
TU2452094 lncRNA upstream 347314 4576508 ~ 4577228 (-) True G2144086
XM_036967218.1 mRNA downstream 66532 4148460 ~ 4158891 (-) False LOC110509299
XR_002471442.2 mRNA downstream 162943 4044281 ~ 4062480 (-) True LOC110509529
XM_036967793.1 mRNA downstream 749996 3449799 ~ 3475427 (-) False LOC110509526
XM_021590446.2 mRNA downstream 750313 3449799 ~ 3475110 (-) False LOC110509526
XM_021590445.2 mRNA downstream 901306 3317596 ~ 3324117 (-) False LOC110509525
XM_021590233.2 mRNA upstream 391205 4620399 ~ 4623436 (-) False LOC110509302
XM_021590451.2 mRNA upstream 456330 4685524 ~ 4690341 (-) True LOC110509533
XM_021590453.2 mRNA upstream 592999 4822193 ~ 4852134 (-) True LOC110509534
XM_036968247.1 mRNA upstream 637516 4866710 ~ 4871169 (-) True LOC110509535
XM_021590456.2 mRNA upstream 839405 5068599 ~ 5124878 (-) True LOC110509538
TU2451088 other downstream 590183 3628165 ~ 3635240 (-) True G2143134
TU2450893 other downstream 901327 3318943 ~ 3324096 (-) True LOC110509525
TU2449079 other downstream 2575692 1649299 ~ 1649731 (-) True G2141289
TU2449041 other downstream 2612214 1598021 ~ 1613209 (-) True G2141258
TU2447514 other downstream 3287514 878919 ~ 937909 (-) True LOC110509502
TU2451852 other upstream 92705 4321899 ~ 4430536 (-) False LOC110509531
TU2451847 other upstream 98229 4327423 ~ 4430536 (-) False LOC110509531
TU2451849 other upstream 98229 4327423 ~ 4430536 (-) True LOC110509531
TU2452980 other upstream 985889 5215083 ~ 5226311 (-) False G2144911
TU2452976 other upstream 989427 5218621 ~ 5226311 (-) False G2144911

Expression Profile

XR_005040416.1 Expression in all Baseline Samples

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XR_005040416.1 Expression in each Bioproject

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XR_005040416.1 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 15.
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