RNA id: trnaa-ugc-218


Basic Information

Item Value
RNA id trnaa-ugc-218
length 72
RNA type mRNA
GC content 0.51
exon number 1
gene id trnaa-ugc-218
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 5746394 ~ 5746465 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGGTTGTAGCttagtggtagagcgcatgctttgcatgtatgaggtcctgggttcaatcctcagcttctcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2453461 lncRNA downstream 42963 5694920 ~ 5703431 (-) True G2145326
TU2453441 lncRNA downstream 76514 5638808 ~ 5669880 (-) True G2145314
TU2453438 lncRNA downstream 78167 5637429 ~ 5668227 (-) True G2145313
TU2453420 lncRNA downstream 129713 5616457 ~ 5616681 (-) True G2145302
TU2453330 lncRNA downstream 144098 5602056 ~ 5602296 (-) True G2145236
TU2453485 lncRNA upstream 4835 5751300 ~ 5753868 (-) True G2145344
TU2453486 lncRNA upstream 24465 5770930 ~ 5777155 (-) True G2145345
TU2453488 lncRNA upstream 24924 5771389 ~ 5777703 (-) True G2145347
TU2453504 lncRNA upstream 47984 5794449 ~ 5797345 (-) True G2145356
TU2453712 lncRNA upstream 59789 5806254 ~ 5806647 (-) True G2145510
trnat-cgu-88 mRNA downstream 442 5745881 ~ 5745952 (-) True trnat-cgu-88
trnat-cgu-87 mRNA downstream 2704 5743619 ~ 5743690 (-) True trnat-cgu-87
trnaa-cgc-6 mRNA downstream 4450 5741873 ~ 5741944 (-) True trnaa-cgc-6
trnat-ugu-44 mRNA downstream 5707 5740616 ~ 5740687 (-) True trnat-ugu-44
trnaa-ugc-217 mRNA downstream 21339 5724984 ~ 5725055 (-) True trnaa-ugc-217
trnat-cgu-89 mRNA upstream 1668 5748133 ~ 5748204 (-) True trnat-cgu-89
trnaa-ugc-219 mRNA upstream 2180 5748645 ~ 5748716 (-) True trnaa-ugc-219
trnat-ugu-45 mRNA upstream 3929 5750394 ~ 5750465 (-) True trnat-ugu-45
trnaa-ugc-220 mRNA upstream 4441 5750906 ~ 5750977 (-) True trnaa-ugc-220
trnat-cgu-90 mRNA upstream 6194 5752659 ~ 5752730 (-) True trnat-cgu-90
TU2453443 other downstream 73704 5641476 ~ 5672690 (-) True G2145316
TU2452980 other downstream 520083 5215083 ~ 5226311 (-) False G2144911
TU2452976 other downstream 520083 5218621 ~ 5226311 (-) False G2144911
TU2452979 other downstream 520083 5225706 ~ 5226311 (-) True G2144911
TU2451849 other downstream 1315858 4327423 ~ 4430536 (-) True LOC110509531
TU2453473 other upstream 3221 5749686 ~ 5755666 (-) True G2145335
TU2453713 other upstream 60600 5807065 ~ 5807624 (-) True G2145511
TU2453855 other upstream 354306 6100771 ~ 6108752 (-) True G2145604
TU2453878 other upstream 394601 6141066 ~ 6148494 (-) True G2145618
TU2453747 other upstream 403111 6149576 ~ 6252866 (-) True G2145542