RNA id: TCONS_00055841


Basic Information

Item Value
RNA id TCONS_00055841
length 3288
RNA type mRNA
GC content 0.42
exon number 15
gene id XLOC_028820
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 28062473 ~ 28161198 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATGTTAAGGTAAAGCCTAAAGCAGCGGTGTTGAACATGCTAAAGCGGCTGGATAAAATCCGATTCCGTGGTCCAAAGAGAGATGATTTTCTGGATCTACCCGATTCCCCTACAGGCTCGGACACTGAATGTAGTGATGATATACTGCTGAGACCTCGACCTTCTCTACGGGACAATGACGAGCAAAGAGACCCTACAAACAGCAGAAGGAGACGGTGTGTTCGCGGTTGCACAACTGGCTGTATGATCGCTTTGGGGTTTACATTGAAGATTTCCGCTTCCAGCCTGAGGAAAACACGGTTGAGGCTGAGGAGCCACTAAGTGCTAAAAGATTAACCGAAAATATGCGACGGCTTAaaCGGGGTGCCAGACCAGTGACAAATTTCTTAAGGAATCTTTCCGCCTTATCTAACTGGCACTCAGTTTACACGTCAGCGATCGCCTTCATTATTTACATGAATGCAGCATGGCATGGCTGGGCTATTCCTTTATTTCTGTTCTTAGCCATTTTGAGGTTGTCGTTGAATTACCTCATTGCCAAAGGTTGGAGAATTCAGTGGAGTATTGTGCCTGAAGTTTCTGAACCTGTGGAACCTCCAAAGGAAGACCTGACTGTGTCTGAAAAGTTTCAGCTAGTTCTAGATGTTGCGCAGAAAGCACAGAACCTTTTTGGTAAGATGGCAGATGTTTTGGAGAAAATCAAAAATTTGTTCATGTGGGTTCAGCCTGAGATCACTCAGAAGTTGTACGTTTCTCTGTGGGTGGCCTTCATCTCCTCCTGCGTTTTGCCCTACAAGCTAATGGGCTTCATGATTGGGCTTTACGCTGGCATCAAATTCTTCATTATAGATTTCCTGTTTAAGAGCTGCCCGAAACTGCGGGACAAATACGACACACCGTACATCATGTGGAACAACCTGCCCACCGACCCGCAGCTGAAAGAACGCAGCAATGCCACTGTGTCACGACGGGTTCAGCCTGTAGTATCGCGGAGTAGTTTAGCCACTATCCCACCCGGAGTGACCCGAGAAGAAGAGAGTGGTCGTTCACACAACCCAAAGAAAGGAGTGTTTCATGAGGTCTTCAACCTACCTGAAATTGAGAGACCTCTGCCCAtttgtGAGAATGGATGGAGATGCTGTCTGATAAACAGAGACAGGAAGATGCCCACTGACTACATCCGCAATGGGATGCTCTACGTCACTGAGAACTACCTGTGTTTTGAGAGCTCCAGCTCAAGATCGGGGTCTTCAAAGAAGAACAAAGTCATCAAACTGGTGGACATCACAGATATCCAGAAGtacaaagttTTATCAGTTCTGCCAGGGTCTGGAATGGGCATCTCTATTGCCACCCCATCAACACAAAAGCCACTGGTGTTTGGTGCCATGATCCATAGAGACGAGGCCTTCGAGACTATCTTTACCCAATACATGAAGATCATGACCACAACCAACCCTGAGACGTAACTCCTGCTGTCGCCTTTAGGAGGATTTATGGTAGAACAGAACAGATCCAGCATCTGCTTAACTTTAACAGATCATAATCTGGATGATTGTCTGCATCTAATGTGATTAGCTGAAGATTCAGCGAGCTGACATTCCAGCAAGAGTTCTGCATCTCAAAAGAAGACACTTTTTTCCCGACTGAAGGGGTGCGAGTGGCTTTTCATCTTGCAACTGTGAACTGGCTTTTAAGGATGAGCACTGCTCAGTGTACAGATTTGTGTTTTATACTCATCTCTCAGTGGTTATGTCATGGAAGATGAGGGGGGGTTTGTTAAGGAACGTCTCTAACGTTTCAAACACTGCAAGAAATAACTTTCTTAATCAGTATTTTGGTTTAACACGAGACATTTTGCAGCATAAGTCAATTTAAGATATGACTATCTTTCAAGTCTTACACAAGTATTCTCCTTGAGGCATTTCCAAAATACTGATTAATGTGAAATGTTCTGCAGTAATAGCATTGTAAGGTGTGCTCACGGTTACAGTGTTTTGCAGCAACAAATCAACAGAACTTCATTTATTTGAATGAGAGTTGGCTATTTGAGGCGCCATAAAGTTGGTTGATAGGCCTTGTGCACTACATTCAATCTTTTTCACATCCACTGCAGCTTTCGCATTAGTAGTGCTAGTGTTTAGTTGGAGGTTTTTATTCGGTGATTCAAGTTACATACAGCGGTCAGAGAATTGCCAGAATTTGCCAAATTTTATTGACAATGAATGACTTTTAATAATTGCTTTGTCATTGCAAATCATGATAAACAggccttttgtttttatttgaacatttgtttacattattgcTGTGTGCACAACACACACAGAAGTCACTTAATCTCACCTCTCAGCAAAGTGTGCTTTATCTGTTAACGCGCAAGTTGTTCCCAAACTTAGCATTGGGGAAAAAGTAGTTTTAAACGATTCGAAatgcctttttttaaacaaaaaaaaactaatgttgtAGCAGTCAGCAAAATCATTACTAATGTATTCACTCACATTTAGAAAGACTAGTTAGACATGATGACTGTCAAATGCGGATAAGAACATGTGCACTTTATTTCAAATTACCTGTACATATGCTGTACTAACATTTTATGTTCGCAGAACCTGTTCGTAAAGTAACTCAAAGCATTGCATAGCATAAACATTTTGGTTCTGGATGTAAACCTAGGCTCTGAAGGAAGGAACAGAGACATGACATTAGAGACTGTGAGATTCCACTTAGGAGAATAATCACTCTGACCAATGACATTTGAAATGACATCTAAACATTAAGCCACACCCATCCATATGAGTATATAAGTGGTACAGGTGCAGACACTCATCAGGGCCAGGTTTCCCAGTAagtttaaaatcatttataaGGGGTTGTCGCAATCAATTAACTAGCTGTTTATGAACTAGAAACTACGCATTATTACAATCATTcttaaaaattagaaaaagtcAATGTATGTGGAAGTAGCACTAATTGATAGTGTAATTGTTAATAGTATGAATGTCTGCTGCTGCACACTATTGAGAGCCGGACCTGAGGTTAGCATTTGAAGAGTACCTGCGCTATGCCACTTATATACCCATGTGAAGGGGTGTGGCTTTGTATGCAGATCTCAATCACCAATTGTCATTGGCCATTTTAAGAAACAGAGCCATAGTGAGTAACCTTGAATATACATCTTGTCAGCCTCCACTGTAGATGGGGCATTCTTTACACTCATCTTAGaagagatggttcacccaaaaatgaaattgtaatgctcttaagtggtttcaaacattt

Function

GO:

id name namespace
GO:0034164 negative regulation of toll-like receptor 9 signaling pathway biological_process
GO:0043280 positive regulation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0006915 apoptotic process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-211 Predicted to be involved in negative regulation of toll-like receptor 9 signaling pathway and positive regulation of cysteine-type endopeptidase activity involved in apoptotic process. Predicted to act upstream of or within apoptotic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human GRAMD4 (GRAM domain containing 4).

Ensembl:

ensembl_id ENSDART00000134605

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058220 lncRNA downstream 1222865 26839078 ~ 26839608 (-) True XLOC_028814
TCONS_00058219 lncRNA downstream 1296663 26752348 ~ 26765810 (-) True XLOC_028813
TCONS_00057358 lncRNA downstream 1640246 26417507 ~ 26422227 (-) True XLOC_028812
TCONS_00057357 lncRNA downstream 1810352 26250874 ~ 26252121 (-) True XLOC_028808
TCONS_00055823 lncRNA downstream 1914923 26127177 ~ 26147550 (-) True XLOC_028807
TCONS_00058221 lncRNA upstream 466534 28624869 ~ 28627715 (-) False XLOC_028826
TCONS_00057359 lncRNA upstream 466534 28624869 ~ 28628533 (-) False XLOC_028826
TCONS_00058222 lncRNA upstream 466534 28624869 ~ 28632583 (-) True XLOC_028826
TCONS_00058223 lncRNA upstream 560894 28719229 ~ 28720774 (-) False XLOC_028827
TCONS_00058224 lncRNA upstream 560894 28719229 ~ 28728040 (-) True XLOC_028827
TCONS_00055838 mRNA downstream 165158 27626869 ~ 27897315 (-) False XLOC_028819
TCONS_00055840 mRNA downstream 165202 27713442 ~ 27897271 (-) True XLOC_028819
TCONS_00055839 mRNA downstream 165313 27627458 ~ 27897160 (-) False XLOC_028819
TCONS_00055836 mRNA downstream 664059 27253240 ~ 27398414 (-) False XLOC_028818
TCONS_00055837 mRNA downstream 664059 27253731 ~ 27398414 (-) True XLOC_028818
TCONS_00055844 mRNA upstream 31678 28190013 ~ 28335184 (-) False XLOC_028821
TCONS_00055843 mRNA upstream 31678 28190013 ~ 28335184 (-) False XLOC_028821
TCONS_00055845 mRNA upstream 33278 28191613 ~ 28334464 (-) True XLOC_028821
TCONS_00055846 mRNA upstream 180307 28338642 ~ 28353538 (-) True XLOC_028822
TCONS_00055847 mRNA upstream 213397 28371732 ~ 28373909 (-) False XLOC_028823
TCONS_00055832 other downstream 921170 27141179 ~ 27141303 (-) True XLOC_028817
TCONS_00055829 other downstream 963188 27088371 ~ 27099285 (-) True XLOC_028815
TCONS_00055827 other downstream 1655210 26407146 ~ 26407263 (-) True XLOC_028811
TCONS_00055813 other downstream 2221571 25840786 ~ 25840902 (-) True XLOC_028802
TCONS_00055802 other downstream 2583478 25474206 ~ 25478995 (-) False XLOC_028796
TCONS_00055849 other upstream 273996 28432331 ~ 28432445 (-) True XLOC_028824
TCONS_00055850 other upstream 383686 28542021 ~ 28542135 (-) True XLOC_028825
TCONS_00055851 other upstream 671559 28829894 ~ 28855677 (-) False XLOC_028829
TCONS_00055888 other upstream 2797006 30955341 ~ 30955504 (-) True XLOC_028861
TCONS_00055889 other upstream 2816581 30974916 ~ 30975079 (-) True XLOC_028862

Expression Profile

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