RNA id: TCONS_00005282


Basic Information

Item Value
RNA id TCONS_00005282
length 700
RNA type mRNA
GC content 0.41
exon number 4
gene id XLOC_002851
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 29820172 ~ 29831944 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGCGCATGAGGTTATTACAGAAAAACGTGTGCAAGCGCCTGGAAACTTCTAGCAAGACGCCACTCATTAATATCGAATCGCTTTTTCTCTAGTGAACTAGAGATTGCAAATAGTTTTAACCTAAAGTGTCTCACAGGATGTCAGTTATTGAAGAGGAGCGCGTCCGCGGCAGCGTTTTTAAAGATATTAATGCGGAAGATGAAGATCAGCAACCTACAGTCATCGAGAGTTTGTGCATGAACTGTTATGAAAATGGAAGCACGCGTCTTCTTCTTACTAAAATCCCTTTCTTCAAAGAAATCATCATCAGCTCCTTCGCATGTCCACACTGTAACTGGTCCAACACAGAAATCCAGTCAGCTGGTCGGATACAAGAACAGGGTGTCCAGTACACCCTACAAGTAAAGACCAAACGGGACATGAACCGAGAGGTTGTGAAGTCTGACAGTGCGTCCACCAGAATCCCACAGCTTGATTTTGAAATTCCTGCTTTTACACAGAAGGGGTCTTTGTCAACAATCGAGGGCCTTCTGGACAGAGCAGTGGCGGGTTTAGAACAGGACCAACCTATAAGAAAGGTGTGCACCTCAACAGCATGAATATATGCCTTTATGCTTGGggttatattataaattatattatgtacTTGAGttgaagaaaacattttaaagcatcaaaataaactaatattattttaaa

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2110 Predicted to enable zinc ion binding activity. Predicted to be active in cytoplasm and nucleus. Orthologous to human ZPR1 (ZPR1 zinc finger).

Ensembl:

ensembl_id ENSDART00000136264

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006075 lncRNA downstream 338426 29266270 ~ 29491087 (-) True XLOC_002843
TCONS_00005269 lncRNA downstream 691509 29128202 ~ 29138004 (-) True XLOC_002841
TCONS_00006074 lncRNA downstream 1364487 28460213 ~ 28465026 (-) True XLOC_002834
TCONS_00005770 lncRNA downstream 1411334 28417651 ~ 28418179 (-) True XLOC_002830
TCONS_00006073 lncRNA downstream 1443944 28382085 ~ 28385569 (-) True XLOC_002828
TCONS_00005294 lncRNA upstream 1430908 31262852 ~ 31294777 (-) False XLOC_002858
TCONS_00006076 lncRNA upstream 1430908 31262852 ~ 31295006 (-) True XLOC_002858
TCONS_00006077 lncRNA upstream 2245867 32077811 ~ 32084121 (-) False XLOC_002862
TCONS_00006078 lncRNA upstream 2245867 32077811 ~ 32084624 (-) True XLOC_002862
TCONS_00006079 lncRNA upstream 2384469 32216413 ~ 32250771 (-) False XLOC_002863
TCONS_00005281 mRNA downstream 2513 29824230 ~ 29827000 (-) False XLOC_002851
TCONS_00005279 mRNA downstream 13046 29815644 ~ 29816467 (-) True XLOC_002850
TCONS_00005278 mRNA downstream 20408 29793817 ~ 29809105 (-) True XLOC_002849
TCONS_00005277 mRNA downstream 60957 29751029 ~ 29768556 (-) True XLOC_002848
TCONS_00005275 mRNA downstream 84592 29735900 ~ 29744921 (-) False XLOC_002847
TCONS_00005283 mRNA upstream 58591 29890535 ~ 29892486 (-) True XLOC_002852
TCONS_00005284 mRNA upstream 64331 29896275 ~ 29903165 (-) False XLOC_002853
TCONS_00005285 mRNA upstream 64439 29896383 ~ 29900546 (-) True XLOC_002853
TCONS_00005287 mRNA upstream 785882 30617826 ~ 30785501 (-) True XLOC_002855
TCONS_00005288 mRNA upstream 1165294 30997238 ~ 31016806 (-) False XLOC_002856
TCONS_00005276 other downstream 90405 29736186 ~ 29739108 (-) True XLOC_002847
TCONS_00005273 other downstream 121331 29708068 ~ 29708182 (-) True XLOC_002845
TCONS_00005263 other downstream 905880 28923517 ~ 28923633 (-) True XLOC_002838
TCONS_00005262 other downstream 907262 28922135 ~ 28922251 (-) True XLOC_002837
TCONS_00005252 other downstream 1374342 28454500 ~ 28455171 (-) True XLOC_002833
TCONS_00005286 other upstream 699199 30531143 ~ 30531257 (-) True XLOC_002854
TCONS_00005293 other upstream 1189412 31021356 ~ 31104754 (-) True XLOC_002857
TCONS_00005308 other upstream 2710592 32542536 ~ 32610769 (-) False XLOC_002866
TCONS_00005309 other upstream 2735680 32567624 ~ 32610694 (-) True XLOC_002866
TCONS_00005329 other upstream 3544874 33376818 ~ 33376941 (-) True XLOC_002883

Expression Profile

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