RNA id: TCONS_00058224


Basic Information

Item Value
RNA id TCONS_00058224
length 1960
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id XLOC_028827
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 28719229 ~ 28728040 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGTTagaaatttattactttttaattgtaGCTCTTTTATTTCTTTCTATGAATGTAGCTGTGTTATGCCCATGTATGTTATATAGTTGTGTCATGTTTATGTATGTAATTTAGCTGTGTCATGTTCATGTATGTACGTCAAGAGGGGCCAGGGTCTGTGGTGCCAAGGCCAGATAATACAGAACGTAAAGGACCACACCCGGCCAATTCCTAGAACACCAGTTGTTTACACATGTGTATAAAAGTGGTTGGAAGGAAAGAGTTGTTGTTGAAGATGGCCTTAACATACGTGAGGGACACCTCCAACCCGGAGCTCTGTATCTATTGAATTATTCAATTGTATTCATTAAATGGCTAATACTTTTGCATTGAAGAAAACCTCTCCTGACTCTCATTGAACACGCAGGGAAATGGCTAATGCCATTAAGAAATCCTAACAATTGGTGACCTCCGACGTGGAGGGGGAGAGAACATTAATCTGTCGTGTTGCATTGACATCAAGGCATGCCAAAACATAAGATTCACCAAACTGGCAGCTGAGGAGTACAGATGGCGGCCATGAGTAAAATCAAGGCCGAGAGGGGGAGTGCGTAGCAAAgaacaacataaacaaatgattgACCCGCTGCCCTCATGCCAAGAGGGGACGTCTGACTAAATAGGGAGTGCAAGCATGTATTGGGGTAGGAGCTAAACACGCAGTAACCTTAATACATGGGAGCAACCTGATAGTAGTGCAGGCCTACGGATGACAACGAGGAAGTGTGCTATCACAAAAGAGGGACAAAGAACAGTGTTCTGTTTGATCACAAAAGAGAAAGTCACTGATTTACCAACAGATGACAATTTGACCAGAACGTTTGAGGTTTTGATTTTCATGTTAATCAATGTCTTGATTCTACCCATAatgctacagtttttaatttcatTGTAAAAAGTTTGGACCTTAGATCTCAATGATATTATGGTAGTTTTGAATTTTTCATtggagcattttttttacaggtttGGATTTCCTTTTTGATCGTAATCAAATTTCTAAAGcttgtttattttgatttgaatTATATTGATAACTAATAATaactgaataatataaataaataatcataccTCTTATGATAAAGTGCATAAGGTAGGAAAATGAAATTGTGAAATAATTGGAAGTTAATGGGAGTGTTTGGCAAAACAAGCCTGAATATAGTGGGCATAATTTTTATGATAAGAAATGATTAGAATGAAGCCATGGAGTAGAGAGACTCCACCACTCAAGAAGAACTAGGGGTGAACAGATTGTTGAGTGAATCCAACAGATAGGGAATTGAGTTAAAAGGGTTTATGggtgttttttaatataatgaaCGAGCACTATGTAAACAACAAGGTGTAAGCAACCATTTTGGAAAAATGGGTAAAGGATtgtatttggcaaatatttgtaataatgttaattgatttttttttttttctttacgttTAGATTTTGGTTATTTGTGGTTGTGAGCTCCTTTAGAGGAGCTCAAAAGAGGGATTTTGTTagaaatttattactttttaattgtagttcttttatttctttctatGAATGTAGCTGTGTTATGCCCATGTATGTTATATAGTTGTGTCATGTTTATGTATGTAATTTAGCTGTGTCATGTTCATGTATGTACGTCAAGAGGGGCCAGGGTCTGTGGTGCCAAGGCCAGATAATACAGAACGTAAAGGACCACACCCGGCCAATTCCTAGAACACCAGTTGTTTACACATGTGTATAAAAGTGGTTGGAAAGAAAGAGTTGTTGTTGAAGATGGCCTGAACATACGTGAGGGACACCTCCAACCCGGAGCTCTGTATCTATTGAATTATTCAATTGTATTCATTAAATGGCTAATACTTTTGCATTGAAGAAAACCTCTCCTGACTCTCATTGAACACGCAGGGAAATGGCTAATGCCATTAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058222 lncRNA downstream 86646 28624869 ~ 28632583 (-) True XLOC_028826
TCONS_00057359 lncRNA downstream 90696 28624869 ~ 28628533 (-) False XLOC_028826
TCONS_00058221 lncRNA downstream 91514 28624869 ~ 28627715 (-) False XLOC_028826
TCONS_00058220 lncRNA downstream 1879621 26839078 ~ 26839608 (-) True XLOC_028814
TCONS_00058219 lncRNA downstream 1953419 26752348 ~ 26765810 (-) True XLOC_028813
TCONS_00058225 lncRNA upstream 25902 28753942 ~ 28755703 (-) True XLOC_028828
TCONS_00058226 lncRNA upstream 101854 28829894 ~ 28859815 (-) False XLOC_028829
TCONS_00058227 lncRNA upstream 118904 28846944 ~ 28849692 (-) True XLOC_028829
TCONS_00055857 lncRNA upstream 411705 29139745 ~ 29142726 (-) True XLOC_028832
TCONS_00057360 lncRNA upstream 418065 29146105 ~ 29147779 (-) False XLOC_028833
TCONS_00055848 mRNA downstream 344102 28372166 ~ 28375127 (-) True XLOC_028823
TCONS_00055847 mRNA downstream 345320 28371732 ~ 28373909 (-) False XLOC_028823
TCONS_00055846 mRNA downstream 365691 28338642 ~ 28353538 (-) True XLOC_028822
TCONS_00055843 mRNA downstream 384045 28190013 ~ 28335184 (-) False XLOC_028821
TCONS_00055852 mRNA upstream 223518 28951558 ~ 28958601 (-) True XLOC_028830
TCONS_00055853 mRNA upstream 304603 29032643 ~ 29050583 (-) False XLOC_028831
TCONS_00055855 mRNA upstream 309768 29037808 ~ 29050583 (-) False XLOC_028831
TCONS_00055854 mRNA upstream 309768 29037808 ~ 29050583 (-) False XLOC_028831
TCONS_00055856 mRNA upstream 313219 29041259 ~ 29050235 (-) True XLOC_028831
TCONS_00055850 other downstream 177094 28542021 ~ 28542135 (-) True XLOC_028825
TCONS_00055849 other downstream 286784 28432331 ~ 28432445 (-) True XLOC_028824
TCONS_00055832 other downstream 1577926 27141179 ~ 27141303 (-) True XLOC_028817
TCONS_00055829 other downstream 1619944 27088371 ~ 27099285 (-) True XLOC_028815
TCONS_00055827 other downstream 2311966 26407146 ~ 26407263 (-) True XLOC_028811
TCONS_00055851 other upstream 101854 28829894 ~ 28855677 (-) False XLOC_028829
TCONS_00055888 other upstream 2227301 30955341 ~ 30955504 (-) True XLOC_028861
TCONS_00055889 other upstream 2246876 30974916 ~ 30975079 (-) True XLOC_028862
TCONS_00055890 other upstream 2257316 30985356 ~ 30985519 (-) True XLOC_028863
TCONS_00055891 other upstream 2263841 30991881 ~ 30992044 (-) True XLOC_028864

Expression Profile

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