RNA id: XR_005040692.1


Basic Information

Item Value
RNA id XR_005040692.1
length 117
RNA type mRNA
GC content 0.45
exon number 1
gene id LOC118945577
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 6304485 ~ 6304601 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgactctggtttctcttcattacgcacaagcctttcgccttttactaaagacttccgtggagaggaacacttacgagttcaatatatttttggagcggctttgcttcttgcagagcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2453911 lncRNA upstream 227 6304056 ~ 6304258 (+) True G2145650
TU2453703 lncRNA upstream 7471 6278174 ~ 6297014 (+) True LOC118945546
TU2453509 lncRNA upstream 25469 6252149 ~ 6279016 (+) True G2145358
TU2453507 lncRNA upstream 52004 6245875 ~ 6252481 (+) False G2145358
TU2453673 lncRNA upstream 87909 6209974 ~ 6216576 (+) True G2145479
TU2453947 lncRNA downstream 33270 6337871 ~ 6339506 (+) True G2145685
TU2453958 lncRNA downstream 41502 6346103 ~ 6346822 (+) True G2145696
TU2453961 lncRNA downstream 43227 6347828 ~ 6349075 (+) True G2145699
TU2453967 lncRNA downstream 59709 6364310 ~ 6364513 (+) True G2145705
TU2453968 lncRNA downstream 60077 6364678 ~ 6421803 (+) True G2145706
LOC118945564 mRNA upstream 1839 6302474 ~ 6302646 (+) True LOC118945564
XR_005040779.1 mRNA upstream 7050 6297319 ~ 6297435 (+) True LOC118945664
LOC118945546 mRNA upstream 7295 6297014 ~ 6297190 (+) False LOC118945546
XR_005040777.1 mRNA upstream 12833 6291536 ~ 6291652 (+) True LOC118945662
XR_005040684.1 mRNA upstream 13314 6290990 ~ 6291171 (+) True LOC118945568
LOC118945566 mRNA downstream 5286 6309887 ~ 6310066 (+) True LOC118945566
XR_005040784.1 mRNA downstream 5630 6310231 ~ 6310347 (+) True LOC118945669
LOC118945571 mRNA downstream 8337 6312938 ~ 6313053 (+) True LOC118945571
XM_036967548.1 mRNA downstream 294459 6599060 ~ 6622505 (+) False LOC110509560
XM_021590504.2 mRNA downstream 294462 6599063 ~ 6622505 (+) False LOC110509560
TU2453697 other upstream 30992 6270224 ~ 6273493 (+) True LOC118945315
TU2453519 other upstream 71987 6188572 ~ 6232498 (+) True G2145368
TU2453662 other upstream 84543 6182511 ~ 6219942 (+) True G2145469
TU2453665 other upstream 109728 6187647 ~ 6194757 (+) True G2145472
TU2453596 other upstream 382179 5914627 ~ 5922306 (+) True G2145424
TU2453996 other downstream 214089 6518690 ~ 6519140 (+) True G2145733
TU2454074 other downstream 347432 6652033 ~ 6658524 (+) False LOC110509307
TU2454073 other downstream 347943 6652544 ~ 6658524 (+) False LOC110509307
TU2455171 other downstream 1695528 8000129 ~ 8000490 (+) True G2146821
TU2457230 other downstream 2653202 8957803 ~ 9032295 (+) False LOC118945282