RNA id: TCONS_00058227


Basic Information

Item Value
RNA id TCONS_00058227
length 2749
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id XLOC_028829
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 28829894 ~ 28859815 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gactgaagagtccaaactgtaaactggagacactgaggtaaaataaaagaaagtttccCTAAAATAATTGCTGCCACAAATTACTTTTACAAGGTGCAAAAAAAGTATGATGAATTAACGAGCTTATgctgtaatgtattttattttttgtttatttagtggGAATATTTCTTGTTTCAGGTGTAAAGTCAAATATGAGAAAACTTATATATTATTGCTCTTAAGTGCAAATTCCGCTGAAATTATCATTGATtcttgttcttttgtttttttttttaacgatactcccaaaatcattccacataaatctgtcTGGCTCTGCTCATTGGGTTTTATTTTTGTCTGACTTGTGaatttgtatgtgttttattagttttgtgtgtgtggaaaTTAAGTCGGTTCTGGTTAGAGTGGAATGATCTCACTGATGTTGTTTTCTCCATTCCGTCTATTTTGACCTTCTCTATGCTAATAATGATCAGGTTACAGTCATCTGTGTCCCTGATTAAACTGCCATAGCCTTCTGATTAGAGTAGTCCACTAGTGtaatagtgtttactttaaagCTGCTTAGTTGCTCTCCTGTATTCTTCTGTAAATCTAGTGATtagtttattatcattatttttgcttcttttttttttgttatgtattgTGAAGTCAGAAAATAGCAAATGCTACTGATAATTATGATTCTCACAGGAATACACTAAACAAGAGTGAGTTCAGCCAGCTGAAGGTGTTACAGTGGACAAGGGTGATGGGGGAGAGGCAGGTTAATAGAAATCATGACAGGGTACAGGATAAGGCAGGTGGACAGGGAGGAGGGCAAAGCCAAGGCAGAAACTACTGGACAGTAAACCAGACCAGATCCTGTGGATAAGAATAAACAGCTGGAGGACAGAGCTTTAGGGGAGCTGGAAAAACTCTCCATGATGATTTAGGTGTAGCAGAAGCCCACTTTTTGTGGAGGTTTGTGGCCAGAGATCCTCAACAGCTGGAGGCCCTGATGTGGCCACCATAATAGCTGGGGTCATGGCATCCATCTTGTGTAATGACTCCTAGGCAGACATCTTGGTAAGATACTGAGGGTTTGCAGGCATGTCAGGTGATGAAGCCACAGGAGTTTAGAGTGTTGAATGTTCAAATAAACTGAGCTAGTAAATTTGagttgaaatctgaaaatgcacttcctgttttctTTCTTCTAAGTTGTAAGACTACATCTGTCTGAGgcattgggtgtggctaacatacttaaccacgccccttcagctgtcagttttgacaacagacAGGAATGGtaaggaggagtctgttaggttgaaAAACATTAGATGCGTTTGACTTCATGCAGTGCTGCGCAGATCGATCTAAATCTGGCTTAAAGCAGTGCATGCTGGGTAGAAATGTTGTCCGGATTGAAGCGGCACGGACGCCATGTGACTGTCACTTGTGGGATCAAAGTATCGTGACAGCGCCCCTGAAGAGCGAATGCTGGAGCTGCGATGACGACACTGATATTACTCGAGTTCACTGCATGACATCAACCACGTGTGTTtcaggtttattattggacaaattccATCTCACAATTTTCAAAACAAACAGTTGACTGTTCATACCCTCTCTATCTTGtacacatcatgcttattaaataactacaacatttttttttaccgcAGTATCATcttttattgaataatttgtttttacacaggctacagagctgtaatctcactgctcagtcttgtgagagtttgtcttcagctctacaatccttaaactgtgtcctgagagagctggacctgagtagcaatgacctgcaggattcaggagtgaagcttctctctgatggactgaagagtccaaactgtaaactggagacactgaggtctgagttcaaacacctgattgattgattgtatttatttattacattaaacaaattactaaaaaatttaactctaattatatatttttttcagactgGTGATGTGTAAACTAACTGTTCagtcctgtgagagtttgtcttcagatctacaatcctcaaactgtgtcctgagagagctggacctgagtcaCAATGCCCAGCAAGATTCAGGAGTGCAGCTTCTCTCTGATGCACTGAAGACTgtaaactgtaaactggagacactgaggtaaatgattttaCACTCAACAGTaacaaaaagtgttttgatttagatggaaatgtccagatatatttaagagcattagtggATAAACTGCAAAATGCTGCTTTTTCAAATGAAAGTTGCTCTTTTTCTCATACAGTTCAGGAAATCAGTCTATGTTAAAgatgattttaattaattacatttaaaatctttatttatatttttatttgatcatatttatagtttatctTTAAATTGGTTTATTGGAAAGTTATATTCAGGATTTTGTCagatgttttggtcattctgaccaaaaaacagaaacaacagaAGCAATATGGATAAGGTCTGAGCAGGTTGCTGGACCCTGCAGCAGTTTTGACAGGCTCTGATAATTTGCATTTTGCAAgatcataaatataaaaagtcaATTTCAATAATTCTAATTAACACAAAATCAAATAGTTTTGTCGTATTATTAaacttatagtttttttttttttttttttttacatcagatgaattactaaaatcacactgttaatgtaatctgtgttcttgTTTCTCAGACTggccatgtgtaatctcactgttcagtcctgtgagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058225 lncRNA downstream 91241 28753942 ~ 28755703 (-) True XLOC_028828
TCONS_00058224 lncRNA downstream 118904 28719229 ~ 28728040 (-) True XLOC_028827
TCONS_00058223 lncRNA downstream 126170 28719229 ~ 28720774 (-) False XLOC_028827
TCONS_00058222 lncRNA downstream 214361 28624869 ~ 28632583 (-) True XLOC_028826
TCONS_00057359 lncRNA downstream 218411 28624869 ~ 28628533 (-) False XLOC_028826
TCONS_00055857 lncRNA upstream 290053 29139745 ~ 29142726 (-) True XLOC_028832
TCONS_00057360 lncRNA upstream 296413 29146105 ~ 29147779 (-) False XLOC_028833
TCONS_00057361 lncRNA upstream 296417 29146109 ~ 29147779 (-) True XLOC_028833
TCONS_00058228 lncRNA upstream 412271 29261963 ~ 29264156 (-) False XLOC_028834
TCONS_00058229 lncRNA upstream 412271 29261963 ~ 29264187 (-) False XLOC_028834
TCONS_00055848 mRNA downstream 471817 28372166 ~ 28375127 (-) True XLOC_028823
TCONS_00055847 mRNA downstream 473035 28371732 ~ 28373909 (-) False XLOC_028823
TCONS_00055846 mRNA downstream 493406 28338642 ~ 28353538 (-) True XLOC_028822
TCONS_00055843 mRNA downstream 511760 28190013 ~ 28335184 (-) False XLOC_028821
TCONS_00055852 mRNA upstream 101866 28951558 ~ 28958601 (-) True XLOC_028830
TCONS_00055853 mRNA upstream 182951 29032643 ~ 29050583 (-) False XLOC_028831
TCONS_00055855 mRNA upstream 188116 29037808 ~ 29050583 (-) False XLOC_028831
TCONS_00055854 mRNA upstream 188116 29037808 ~ 29050583 (-) False XLOC_028831
TCONS_00055856 mRNA upstream 191567 29041259 ~ 29050235 (-) True XLOC_028831
TCONS_00055850 other downstream 304809 28542021 ~ 28542135 (-) True XLOC_028825
TCONS_00055849 other downstream 414499 28432331 ~ 28432445 (-) True XLOC_028824
TCONS_00055832 other downstream 1705641 27141179 ~ 27141303 (-) True XLOC_028817
TCONS_00055829 other downstream 1747659 27088371 ~ 27099285 (-) True XLOC_028815
TCONS_00055827 other downstream 2439681 26407146 ~ 26407263 (-) True XLOC_028811
TCONS_00055888 other upstream 2105649 30955341 ~ 30955504 (-) True XLOC_028861
TCONS_00055889 other upstream 2125224 30974916 ~ 30975079 (-) True XLOC_028862
TCONS_00055890 other upstream 2135664 30985356 ~ 30985519 (-) True XLOC_028863
TCONS_00055891 other upstream 2142189 30991881 ~ 30992044 (-) True XLOC_028864
TCONS_00055892 other upstream 2143494 30993186 ~ 30993349 (-) True XLOC_028865

Expression Profile

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