RNA id: XM_021590235.2


Basic Information

Item Value
RNA id XM_021590235.2
length 1865
RNA type mRNA
GC content 0.50
exon number 4
gene id LOC110509308
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 6912441 ~ 6943779 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGACGCAGACTCTGGATCCCAACTGCTCCAACAGCTCAGAAGACTGGAACAGCTTTTACTTCAACTCCTCAAGGGACCCCCAATACCTCCAAAACCCACCCTACCACTACACCCAACAGAATATCACCTATGTGGACTTGTACCTCCACGAGCCCTCGGTGGCGGTAGTCTTCATTGTGTCCTACCTACTCATCTTCCTGGTCTGTATGGTGGGgaatggtgtggtgtgtttcatCGTGCTGCGGAGCAAGAATATGAGGACAGTCACCAACCTCTTCATACTCAATCTGGCTATTAGTGATTTGTTGGTTGGCATATTCTGTATGCCCACTACCCTGGTGGACAACATCATAACAGGCTGGCCTTTTGGAAGTTTAGTGTGTAAGCTGAGTGGGATGGTTCAAGGCATATCAGTGTCAGCTTCAGTCTTTACTCTGGTGGCAATAGCTGTGGACAGGTTCCGCTGCATTATATACCCCTTCAAGCAGAAGCTGACCATCTCCACCTCCACGCTGATCATTGTCATCATCTGGGTCCTGGCTATCTCCATCATGTGTCCTTCAGGGGTCATGCTCCAGGTGACCAAGGAGCAGCGTGTCCTGATTCTACTGGGGGACGGCTACAACAACACACGCCCAATCTACTGGTGCCGTGAGAACTGGCCCAATCAGGAAATGAGGAAGATCTACACCACCGTCCTATTTGCTAACATCTACCTAGCCCCACTGTCCCTCATTGTCATCATGTACGTCCGGATCGGATTCACACTCTTCACGATGGCTGTACCCGCCTCAGGCCGGGGAATCAGTAGTGGCAGCAGTGGTGGGACGAAGCCCGGCCTGGACAACCACCGTCAGATGGTgtcgaagaagaagaagagggtgaTCAAGATGCTGCTGATGGTGGCGTTGCTTTTCATCCTGTCGTGGCTGCCGCTCTGGACGTTGATGATGCTGAGTGACTACGCCAGCCTGACAGCGAACCAGCACCGTGTCATCAACATCTACGTGTACCCGTTGGCCCACTGGCTGGCCTTCTTCAACTCCTCCGTCAACCCCATCATCTACGGCTTCTTCAATGAGAACTTCCGCCGGGGGTTCGAGGCCGCGTTTAAGTTCCAGCTGTGCGTCGCCTACATGGAGCGCCAGGGGATCTACTCGCGTCGTATCCAAGGCAATGCAGTGTTACCTGAGAACCTGCATCTGCCCACCAGGCCCGGCTCGGCAGGGTCAGGATTGGCTTTGGTGAACGGGAAGGGGCTGGGCCGGGAGGAAGTTGTCGGACGGACGTCAGGCGAGAGGTCGTCGGGGAGCAACATAAAGGAGCATGATCTGATCATGGAGGACCTGGAGAAGGTATCCCAGATTTAaacatgtcatactgtatgtgCCATTGGGACATGTATTCAGATAACCTGGAGATTGTATCCCGTATTTAAAAATGACAGTTAAACATTTGTACTGTTGCATGAACTGTAATACACATACATGTAATGTACCTATATTGTGCAATAGACATTCAGGGCACAGAGAGGACACAGGCGGTGGGTGCTCCAAATCGCACCATGTTCCCTATATTGCAccactttttaccagggcccatttgggatgcagacgcTGTGAAGGTATTATTTCAGAGAGTCAAACCAACCACATAGAGAGAGGCCCTTGAGGGTAAACTTGACTCTTTAGGAATATTTTTAAATATGGTTCTTTCCCCACAGCACAATATCTTGTTGTGTTGGTTTATTATGTGATTAGTCACCCATTCACATCTTGGTATAGCATAAGCATGTACTATCCCAGTAACAAAATTCAAGTTGAAGTTATGTTAAttttaggttctgaatgaaaggtgaaaataC

Function

GO: NA

KEGG:

id description
K08375 NPFFR2; neuropeptide FF receptor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2454466 lncRNA downstream 13669 6876755 ~ 6898772 (-) True G2146162
TU2454450 lncRNA downstream 56823 6854980 ~ 6855618 (-) True G2146146
TU2454449 lncRNA downstream 57570 6854163 ~ 6854871 (-) True G2146145
TU2454445 lncRNA downstream 61883 6850320 ~ 6850558 (-) True G2146141
TU2454394 lncRNA downstream 129024 6783210 ~ 6783417 (-) True G2146094
TU2455286 lncRNA upstream 137588 7081367 ~ 7092061 (-) True LOC110509569
TU2455284 lncRNA upstream 156240 7100019 ~ 7188516 (-) True LOC110509571
TU2455432 lncRNA upstream 320585 7264364 ~ 7300701 (-) True G2147062
TU2455417 lncRNA upstream 335591 7279370 ~ 7282270 (-) False G2147060
TU2455419 lncRNA upstream 335659 7279438 ~ 7282270 (-) False G2147060
XM_021590520.2 mRNA downstream 140624 6767077 ~ 6771817 (-) True LOC110509566
XM_021590518.2 mRNA downstream 148969 6756610 ~ 6763472 (-) True LOC110509564
XM_021590516.2 mRNA downstream 200005 6698719 ~ 6712436 (-) True LOC110509562
XM_021590515.2 mRNA downstream 200018 6689542 ~ 6712423 (-) False LOC110509562
XM_021590517.2 mRNA downstream 200018 6689542 ~ 6712423 (-) False LOC110509562
XM_036967513.1 mRNA upstream 55861 6999640 ~ 7072615 (-) False LOC110509568
XM_036967514.1 mRNA upstream 55861 6999640 ~ 7072615 (-) True LOC110509568
XR_002471447.2 mRNA upstream 137372 7081151 ~ 7084474 (-) False LOC110509569
XM_021590528.2 mRNA upstream 160426 7104205 ~ 7108489 (-) False LOC110509571
XM_021590541.2 mRNA upstream 558501 7502280 ~ 7504108 (-) True LOC110509574
TU2454332 other downstream 262778 6649178 ~ 6649663 (-) True G2146036
TU2454257 other downstream 317967 6581191 ~ 6594474 (-) True LOC110509559
TU2453747 other downstream 659575 6149576 ~ 6252866 (-) True G2145542
TU2453878 other downstream 763947 6141066 ~ 6148494 (-) True G2145618
TU2453855 other downstream 803689 6100771 ~ 6108752 (-) True G2145604
TU2456440 other upstream 1187004 8130783 ~ 8168031 (-) False LOC110509586
TU2458082 other upstream 2421433 9365212 ~ 9437537 (-) True ttc33
TU2459830 other upstream 3774242 10718021 ~ 10799318 (-) True G2151189
TU2460429 other upstream 4007470 10951249 ~ 10969301 (-) True ttll11
TU2460472 other upstream 4049387 10993166 ~ 10993879 (-) True G2151771

Expression Profile