RNA id: TCONS_00055854


Basic Information

Item Value
RNA id TCONS_00055854
length 4802
RNA type mRNA
GC content 0.41
exon number 8
gene id XLOC_028831
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 29032643 ~ 29050583 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAAAATATACAGTTTAACAAATGTGCGACTATAAAACCTCTAAAACTTTACCTCTGTCTCAACAAAAGCGTctcagagggaaaaaaaacttatatCTTTAAAAGGTTAAACAAAAACTGCTCCGAGGAGGAAAAAACTAATAGACGCTGATTGGGGAACGAaaaactccagaagaaaaactccAGCAACACAAACTCTCCGTATAGAGGGAACAGTCATAAAAGACTAAAGTTGATATTAAAAGGAAAAAGGCTTCTCGGTAGAGGGATTGACGGTCTTCTCACAGGggtgtaataacaataatacccGACAGAGGGCGATACCGCAGAACGACACACCTGCGAGGAAGAGTGAGCGCTGGGAAGGGGAGTGCTGGAAGATGCTGGCGAGCAGCAGGACAAAAATCTAAACGGAACATGATCAAGGACACCAAAACTGACTGGAAATCAGACTAGAGGGATGAAGGAGAACACGTCAGTTAATCGCAACATTTTCTATTGCCTGCTGTGCCAGAAGCCACAGAAAACTCTCTCTGTACACCTGACCAGGCTGTGCATGAAGGCCAGCACACCAGCGGAGAGAGCCAAGGAGCTGGAGAGGGCCAAGGCATCCAATAGGGCCTGGATGATGACCAGCAGGACCTGGGACTACAACCAGCTCTGCCAGATCCTTCCCGATAGGAGCTCTCGCACCAATATGGTGAAGGAGCTCCTTCAGCGTGGGTTTTTCATCAAAAACCAGCCCACAGAACCGGAAACAGATGTTGTGAGCCAGTCCACAGAACCGGAAACAGCTGTCGTAAGCCAGCCCACAGAACCGGAAAAAGCCACCATGTCTGCCATTCCTGACAGCGCTGCTATTTTGAGAGCTGCCAAACCTGAATTCTTGCGAGTCTGCATGAAACTGCAAAACAACATTGAGGTCCTTAGTAGTGAGAAGGTGCTCTTCCGCTATTATTGTGAGGCTATCTTGATCCACCACTACTTCCAAAGCCCTGGAGCGGTGCAAGCCTTCACAGATTCAGAATGGGTGGACCGGCTTCACCACGGTGGCAGAGTTGTGACTGGCGTCCACAGCCAGAAAGCGATGTTTGCCCTCACTCTTCAAGAGGAAGTGTGGTTTCAGCTGTATTTTGTGCAGATCAGGCCTGAAAACATCCGGCCTGAGAAGTGCTGCAACCAGTTTTTTCTTAACTCTTCTGGCGAGGCTTTGAGCAATGTCGCACAAGACATGAGACGCCTGCATGACATGTTTAAGCTGCCCTTGGGCAGCAGTCAGTTTATGCGGAAGACTCTTCGGATTTCTGCAAAAAACCTGCCTACACACCAGCGAGACGCCATTACACTTTATCTGGCCTGCAGTTCTGGAGACCCACACCAAACTCACAGAAGGCTGCAGCCTCAGCAGGTTGTTGACACGGCTGTGCTGCTGGACTCCTTGGTGGGCTTTTCGATAGAAGACGAGAGCCGTGCAGTGGCTGAAACCAGCGAGGAGATCGAGCCAGTGAAAGACTTCTCATCATTTATTTCCAGTTTTCCAGTCTCCCGTGGAGGTCAGCCACCGACTAAGATGCAGCGGCTCAATGCCGGATTTCCTGATGACCGTGTGTTTTATGATAAGTGGAGAACCGTCCAGTATAACCAGAGACAGGAATATCTGTTGTcACAATTCACACAGAGTAAACCAACAGCTGTCACAGTGGCAAAGGTTATTGGACAAGAGGGGTGGAAAGGCAATCACCCTAAGCCTGAGGAGATTGTGAGCCTTTGGAAGCCGGCTCTCAAGGTGACCATCGAGAAAGATGAAATTATCATCAAGTCTGTTTCGCAGCAGAGCTGGTCAGGCCTTGCCATTAAGGACTTTGGTCCTGTGCGGGGTCAAGGAGTGGTTGCAACCAAGCGCTTTTCCAAAGGTGACATTGTCTGTGATTACCATGGGAAGGTCATCTCTGGCACCAGTGGAAGACAGATAATGGAAGACATCAGAGATAAAAGCGGctaccttttctttttcaaagcAGGACAGAGGGACTTCTGCATTGACGCGCGGACCTTCCCTTGTGAGTGCCATCCAGACAAAGTCTCGTTTGGGAGAAAAATCAATCACTCATCCAAGATGGCAAACCTTAAGCTGGTACACTGTGTGATGAAAATCAATGGGAAGGACACTGATGTTGTGCTTTTTAAAGCACTGCAAGACATCGACgtgaacacacatttaaaatttgaccataaatttatttctttttaaattattataggCCATGCAAAGGACAGCTGATCAGGGCATTACTGTGTGTTTCGATGCTAAAAAGAAAACCCATAGATGTGAAATTGGTCTGTGGCCTAAAAGAACTCTCCAGAAAGTTTGCAGTTCTAGGGAAAAATAAGAGTTCTGTTATAAGGTATAACATGCAAATACATGTGGTTTTCACTGAGTTCTGTTTCTTAATTGTCTTGAAGATATTAAAAAGATGTGCATTTGTTATGCTGGAATCTTTATAAACTGAACTTCAGAATTCCCTGTACTTAAATGTGCAGAACTCTGTTCAAACAACAGCATATCTTTTTACGTTATATGTAAACTCCTGCTGACCAAAGAATGTTTGAGGAGCTCTCCGGACTCAGGTCATGGGATACTGGGGACTGGGTTGAACTGCTGCAAactaacttaaaataaaacaggGAAAACATGATGATTATTTTGAAAATTTCTATCATTATATGGtcaacattaatataataatgcaaCATTAGGTTTTGTCTTAAAACCCTCTTCAAAGTGTCAGTTTGTGTTTCACAGAGATActactagagacccagacttaagtaaaagtacaagtgctctatcaaaaaagtgactcaagtagaagtagaagtgctacTTAAGTGGAAtaataaagtattcaacatttttgtactgaagtattgcaagtagtttatttcaaaatgtactactcaagtactgaaagtaaaagtacaagtattgtctAATGTAGTTATTcaaaaagcagtcaaaagacatattgttttgtttattttaaatatcttttttgggccATGTTATTAAGCAGAACGAGAAAGAAaaggcttatgatactgttcttctctcgcgcttgaaccacagatctggCAGAAATTTAACAGCTTTAACagacacctttcaaagttgtgtcacAAAAATACTTTCTAATCCACTCAAAGCACTATTAAAACCTATTTATAGATCGCGAATtactgtaaacggaagttctaaacattctggTCATGAAGATGCTGGTCACTATGGCGCTTGTCTCTGGAGAAATCTTTGTCATGTTTAAATCTTATCACGGTCTGCGTTACAAGCTCACTGCCACAACATAAGCAGCCAGTGCTTGTATTGCCGTTTTAAATAGACCGCCCGTGCTTTCTTGTGTTGATGCATGTTTTTTCATTCCAATAATTGGTTGAAATGTTCTGTaataaaagctttaaataaaacacaaaaggtaaacaaccCGATGAACTGAAGTGTGCGGTCATCCATTAACACGATCATCAATGTAAGTGGGTGAGTAATACCAGCGCGCGCATAAACTTACACCGGCAAAAATAATCATTATGATTAATAATGTGTTGAgggaaacaaaaacatttttattctttgttaataaaataatgcagCTATATTCTCAGTGATGTAGgctgaaaaatatttttgtgctgtgtactgttttattgctgtgacttgggggggggggggggtatgtgGAGCATTTCtaggcaaattcataatgattcactttgtttagtaaatttcatagttataaaacacatttaaagaatATTTGAACACATTCAGCTATTCCTTTTTTTAATTGCACCAAAGGTATAATCGCAAAGGAACATTAAATGTAAACTGCTTAATTGTGTGCATAAACGCATATGGTGCAAATACCTTAATTAGGTATTGTGAGAATaaagatgtctgcatatttgtagTGAGTTTttgtagttaaagtttgcataaccaaatATTAATCTTATCCACCTGTGACTGacccataagtaaatatgcagacAAGTTTTTGATTAGCTGACAAGAGCATTACCAGCACCCACTGAAATAACTTAAAAATCATGTGGGATAAACGTGATAGCGGGAttaaatggtaaaatacgggagaatctcgACAAAAACGGCAGGGTTAAGTTGCCCACAGAAATTTTCTGGTAATAGCTCagtataaaatgtatttcataaCATCATCTTTTTGATTGACGCCGTCAAACGTTCTGCCCAAATGCTCAAGAGGCACCTAATCACATTAATATTTCCCTAAGCTATATGACACTTGATGGATAATTTCCCTTTATTTAAGAGAATAATTTAAGGATGATGCATATTATTCGGTTATCAAGGAAACCGTTAAGTGTTGCAGGACATAAGAAGAAGTAATAAAATATAAGCTAGgctatagcctatatttcgttaATTGCGCTCAGCAGCTACAATTAAAGCTCtacatttactgttttgtttattttttatttatataaaaacaaacacttgtttgagCAGGGCTGGATGACAGAAAAGAAGCGGTTGGTAAAACCTCTGCCGcaaatttttaaatgcattaaatggcAAGCGCATACCTTAGCCTTACCCTGAGTTTGTTCACTCTGAATGTATTAGCATAtagctgtattttaatatagctaattttgatgaattagctctaacttTTGAcaactttttcttctttttacgcAATTATTcatgaattataaaaaaaagaaaaaaaaactaagggggc

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-158 No description available

Ensembl:

ensembl_id ENSDART00000181276

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058226 lncRNA downstream 177993 28829894 ~ 28859815 (-) False XLOC_028829
TCONS_00058227 lncRNA downstream 188116 28846944 ~ 28849692 (-) True XLOC_028829
TCONS_00058225 lncRNA downstream 282105 28753942 ~ 28755703 (-) True XLOC_028828
TCONS_00058224 lncRNA downstream 309768 28719229 ~ 28728040 (-) True XLOC_028827
TCONS_00058223 lncRNA downstream 317034 28719229 ~ 28720774 (-) False XLOC_028827
TCONS_00055857 lncRNA upstream 89162 29139745 ~ 29142726 (-) True XLOC_028832
TCONS_00057360 lncRNA upstream 95522 29146105 ~ 29147779 (-) False XLOC_028833
TCONS_00057361 lncRNA upstream 95526 29146109 ~ 29147779 (-) True XLOC_028833
TCONS_00058228 lncRNA upstream 211380 29261963 ~ 29264156 (-) False XLOC_028834
TCONS_00058229 lncRNA upstream 211380 29261963 ~ 29264187 (-) False XLOC_028834
TCONS_00055852 mRNA downstream 79207 28951558 ~ 28958601 (-) True XLOC_028830
TCONS_00055848 mRNA downstream 662681 28372166 ~ 28375127 (-) True XLOC_028823
TCONS_00055847 mRNA downstream 663899 28371732 ~ 28373909 (-) False XLOC_028823
TCONS_00055846 mRNA downstream 684270 28338642 ~ 28353538 (-) True XLOC_028822
TCONS_00055845 mRNA downstream 703344 28191613 ~ 28334464 (-) True XLOC_028821
TCONS_00055859 mRNA upstream 602913 29653496 ~ 29676080 (-) False XLOC_028835
TCONS_00055860 mRNA upstream 702764 29753347 ~ 29753895 (-) True XLOC_028837
TCONS_00055861 mRNA upstream 707706 29758289 ~ 29769304 (-) True XLOC_028838
TCONS_00055862 mRNA upstream 769805 29820388 ~ 29821139 (-) True XLOC_028839
TCONS_00055863 mRNA upstream 778085 29828668 ~ 29833326 (-) True XLOC_028841
TCONS_00055851 other downstream 182131 28829894 ~ 28855677 (-) False XLOC_028829
TCONS_00055850 other downstream 495673 28542021 ~ 28542135 (-) True XLOC_028825
TCONS_00055849 other downstream 605363 28432331 ~ 28432445 (-) True XLOC_028824
TCONS_00055832 other downstream 1896505 27141179 ~ 27141303 (-) True XLOC_028817
TCONS_00055829 other downstream 1938523 27088371 ~ 27099285 (-) True XLOC_028815
TCONS_00055888 other upstream 1904758 30955341 ~ 30955504 (-) True XLOC_028861
TCONS_00055889 other upstream 1924333 30974916 ~ 30975079 (-) True XLOC_028862
TCONS_00055890 other upstream 1934773 30985356 ~ 30985519 (-) True XLOC_028863
TCONS_00055891 other upstream 1941298 30991881 ~ 30992044 (-) True XLOC_028864
TCONS_00055892 other upstream 1942603 30993186 ~ 30993349 (-) True XLOC_028865

Expression Profile

//