RNA id: XM_021590528.2


Basic Information

Item Value
RNA id XM_021590528.2
length 1419
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC110509571
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 7100019 ~ 7188516 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTGCTGTGCAGTTTGCCAGATCTCACAGTAATGTTACTCAATCAACCAGATAAGCAAACGTTTAGGGCGGTCGAATGTATATTACGGTGGCTAGATGTTGCAGAGCTCGCTGACGCAAAGCTACATTTTAATGGCAGGGCGAAGTTTTGTTTCAGTCCAGGGGCCGCTTTAATCAGTCTGTGACATTTGGACTAGTTTGACAAGCCACGGCACTGGCACTGTGCTGATACTGACTGGACTGGAATCATTTGTTTTGACTTCATCTCTTTCCACAACGGCCTAGCGAAGGCTCCTATTGTATAACTTTAAAGAAGATAAACATGAGCTTTCTTTTTGGCAATCGGTCTTCCAAGACCTTCAAGCCCAAGAAGAACATCCCAGAGGGATCTCACCAGTATGAGCTGTTGAAACATGCAGAGGCTACACTGGGCAGTGGGAATTTACGCATGGCTGTCATGCTGCCTGATGGGGAAGACTTGAACGAGTGGGTGGCTGTCAACACTGTAGATTTCTTCAACCAGATCAACATGCTCTATGGTACCATAACAGACTTCTGCACTGAAGAGAGCTGTCCTGTCATGTCTGCTGGGCCCAAATATGAGTATCATTGGGCAGATGGAACCAACATCAAAAAGCCGATCAAATGCTCAGCTCCCAAGTACATTGATTACCTAATGACCTGGGTGCAGGACCAGCTCGATGACGAGACACTCTTCCCATCTAAGATAGGTGTCCCGTTCAAGCGGAACTTCATGTCGGTGGCTAAGACCATCCTGAAGCGCCTGTTCAGGGTCTACGCCCACATCTACCACCAGCACTTTGACTCTGTGATGCAGCTGCAGGAGGAGGCCCACCTAAACACCTCCTTCAAACACTTCATCTTCTTTGTTCAGGAGTTTAACTTGATTGAAAGGAAAGAGCTGGTCCCACTACAGGATTTGATTGAGAAGCTGACCACCAAGGACAGATAAACCCAGGCTGACTGATCATTTTAACTCTGTGATAGTCTACTATTCTTTTTGCACAGATACCCCTTCTGCCCTGCCCTGGCCTATATGTATACAGCATACGCTAACTTTGCGAACATGTTCTCTAGAAAGCCAGGTAAGTAAAGGAAGAGTCTTGCACTGTTATAGGCACTAGGGTAATACTATGGGGGAGTTCTATACTACTGTCTGAGCCGGTATGTGCTCTATAGTTGGATGTACTATGTGGTTTTAATTTGGACGGATCCCTAAAACTGAAATAACTATGTATTGACATCCTCTGTGTGTTGTATATTTACAGTgacagccaaaagtttggacacacctactcattcaagggtttttctttattttgactattttctacattgtataataatagtgcagacatcaactatgaaataacacatggaatcatgtagtaaccaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2455286 lncRNA downstream 12144 7081367 ~ 7092061 (-) True LOC110509569
TU2454466 lncRNA downstream 205433 6876755 ~ 6898772 (-) True G2146162
TU2454450 lncRNA downstream 248587 6854980 ~ 6855618 (-) True G2146146
TU2454449 lncRNA downstream 249334 6854163 ~ 6854871 (-) True G2146145
TU2454445 lncRNA downstream 253647 6850320 ~ 6850558 (-) True G2146141
TU2455432 lncRNA upstream 155875 7264364 ~ 7300701 (-) True G2147062
TU2455417 lncRNA upstream 170881 7279370 ~ 7282270 (-) False G2147060
TU2455419 lncRNA upstream 170949 7279438 ~ 7282270 (-) False G2147060
TU2455420 lncRNA upstream 170949 7279438 ~ 7282428 (-) False G2147060
TU2455418 lncRNA upstream 171001 7279490 ~ 7282270 (-) True G2147060
XR_002471447.2 mRNA downstream 19731 7081151 ~ 7084474 (-) False LOC110509569
XM_036967513.1 mRNA downstream 31590 6999640 ~ 7072615 (-) False LOC110509568
XM_036967514.1 mRNA downstream 31590 6999640 ~ 7072615 (-) True LOC110509568
XM_021590235.2 mRNA downstream 160426 6912441 ~ 6943779 (-) True LOC110509308
XM_021590520.2 mRNA downstream 332388 6767077 ~ 6771817 (-) True LOC110509566
XM_021590541.2 mRNA upstream 393791 7502280 ~ 7504108 (-) True LOC110509574
LOC110509578 mRNA upstream 412739 7521228 ~ 7528208 (-) False LOC110509578
XM_021590551.2 mRNA upstream 781280 7889769 ~ 7901814 (-) True LOC110509579
XM_021590552.2 mRNA upstream 806896 7915385 ~ 7927945 (-) False gfm2
XM_036967444.1 mRNA upstream 811635 7920124 ~ 7927945 (-) False gfm2
TU2454332 other downstream 454542 6649178 ~ 6649663 (-) True G2146036
TU2454257 other downstream 509731 6581191 ~ 6594474 (-) True LOC110509559
TU2453747 other downstream 851339 6149576 ~ 6252866 (-) True G2145542
TU2453878 other downstream 955711 6141066 ~ 6148494 (-) True G2145618
TU2453855 other downstream 995453 6100771 ~ 6108752 (-) True G2145604
TU2456440 other upstream 1022294 8130783 ~ 8168031 (-) False LOC110509586
TU2458082 other upstream 2256723 9365212 ~ 9437537 (-) True ttc33
TU2459830 other upstream 3609532 10718021 ~ 10799318 (-) True G2151189
TU2460429 other upstream 3842760 10951249 ~ 10969301 (-) True ttll11
TU2460472 other upstream 3884677 10993166 ~ 10993879 (-) True G2151771

Expression Profile