RNA id: TCONS_00055857


Basic Information

Item Value
RNA id TCONS_00055857
length 1192
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id XLOC_028832
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 29139745 ~ 29142726 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atgcATACTTTGGCTACAATTATGACCTCACAAGAGCCTTGAGTTCTTTAAGccattcacagaaaaaaaattaaaactattgttgTTTTTAGAACCTgtcaataattatatttatttttctgtaaaagGCAAACTTCACAACATGATGACTCTGGGCTCTGTGATGTAAAAGAGAAAATTGAGGAGCTTCTACTAGCATTTGAAGGTCTACCTGCCATGTCAGCTAAACTGAGAGAGCTGTGCAAATGCCTCACAGAACGGCAAAGTGAGGTTCTGAGAACATCGTTCAAGTGCTGTGTGTTCAGAGGAGTGATGGACAGTCCTGTCTCGGTGCTGTTGTAGCCTTATTGGCTGTCGACAATGCATAGAGGCAGTAGTGGACGAGGGCTAAGCCTGTATAAAATGCAGGTCTGCAGTGTCAAGAGATTTTATTGTGGTTGTGGCTGGCTTGTCTGAGGTCCTGAGTATCATTAAGGCCTTAGACAAGCAGTACAACTCCTGTTGAAGCTGTCAACTGAACCCTCCAAGCTGATGTCTGGGTCTGGCAAGAGCACATTTTGATTAGAAGGAATCATTTAATTCGGTTTGgccatttgcatttttttaatgcttttcctattaaaagcttgactcttctgttgtGACATTGTGTTCTAGATGGGAACTTTTCATTTTGTCAATCTTGTAGTCTGATATGGCTAGGATCTGTAGTCTTCTTTCAGtgtaatcaaggaactttgctgctgttcCATGATTGTAACAGGTGTAATATTACGCAATGCTGTTACCTAGCTGGGAACAATTTTTAAGTGCTGTATGTTTCTTTTGCTAcagccatggtatggcagcaaaatACTTTCAAAATTAAGCTGGAATGTGTATAGAacctagccatatcagcctagaaaaaaAACTACCATGTGATGACATATGTCAAACTCTAAATGGGAAAGtcagaacttttttttaattagcaagaTGCTATtgcaataatctatgctaagctaaagccAACTCCCCCACCCcccttatttaaaatgttttgtattaGTTTGTATGCATGTTTATATGCAGTTTACACAATACAGTACGTTAGTGTTATTACTACCTTTTTCATACATTTTGTGATTCAAAGACAATGTTTTAAACATTCTGTTGGCATGtttgagaataaaaaaaactttcattgaaT

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0042391 regulation of membrane potential biological_process
GO:0048468 cell development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0006936 muscle contraction biological_process
GO:0030154 cell differentiation biological_process
GO:0006941 striated muscle contraction biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0048513 animal organ development biological_process
GO:0003143 embryonic heart tube morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0060429 epithelium development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0008015 blood circulation biological_process
GO:0003008 system process biological_process
GO:0003012 muscle system process biological_process
GO:0003013 circulatory system process biological_process
GO:0003015 heart process biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0001947 heart looping biological_process
GO:0060047 heart contraction biological_process
GO:0060048 cardiac muscle contraction biological_process
GO:0042383 sarcolemma cellular_component
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0045121 membrane raft cellular_component
GO:0098857 membrane microdomain cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0005901 caveola cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0044853 plasma membrane raft cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0030054 cell junction cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058226 lncRNA downstream 279930 28829894 ~ 28859815 (-) False XLOC_028829
TCONS_00058227 lncRNA downstream 290053 28846944 ~ 28849692 (-) True XLOC_028829
TCONS_00058225 lncRNA downstream 384042 28753942 ~ 28755703 (-) True XLOC_028828
TCONS_00058224 lncRNA downstream 411705 28719229 ~ 28728040 (-) True XLOC_028827
TCONS_00058223 lncRNA downstream 418971 28719229 ~ 28720774 (-) False XLOC_028827
TCONS_00057360 lncRNA upstream 3379 29146105 ~ 29147779 (-) False XLOC_028833
TCONS_00057361 lncRNA upstream 3383 29146109 ~ 29147779 (-) True XLOC_028833
TCONS_00058228 lncRNA upstream 119237 29261963 ~ 29264156 (-) False XLOC_028834
TCONS_00058229 lncRNA upstream 119237 29261963 ~ 29264187 (-) False XLOC_028834
TCONS_00058230 lncRNA upstream 119237 29261963 ~ 29264199 (-) False XLOC_028834
TCONS_00055853 mRNA downstream 89162 29032643 ~ 29050583 (-) False XLOC_028831
TCONS_00055855 mRNA downstream 89162 29037808 ~ 29050583 (-) False XLOC_028831
TCONS_00055854 mRNA downstream 89162 29037808 ~ 29050583 (-) False XLOC_028831
TCONS_00055856 mRNA downstream 89510 29041259 ~ 29050235 (-) True XLOC_028831
TCONS_00055852 mRNA downstream 181144 28951558 ~ 28958601 (-) True XLOC_028830
TCONS_00055859 mRNA upstream 510770 29653496 ~ 29676080 (-) False XLOC_028835
TCONS_00055860 mRNA upstream 610621 29753347 ~ 29753895 (-) True XLOC_028837
TCONS_00055861 mRNA upstream 615563 29758289 ~ 29769304 (-) True XLOC_028838
TCONS_00055862 mRNA upstream 677662 29820388 ~ 29821139 (-) True XLOC_028839
TCONS_00055863 mRNA upstream 685942 29828668 ~ 29833326 (-) True XLOC_028841
TCONS_00055851 other downstream 284068 28829894 ~ 28855677 (-) False XLOC_028829
TCONS_00055850 other downstream 597610 28542021 ~ 28542135 (-) True XLOC_028825
TCONS_00055849 other downstream 707300 28432331 ~ 28432445 (-) True XLOC_028824
TCONS_00055832 other downstream 1998442 27141179 ~ 27141303 (-) True XLOC_028817
TCONS_00055829 other downstream 2040460 27088371 ~ 27099285 (-) True XLOC_028815
TCONS_00055888 other upstream 1812615 30955341 ~ 30955504 (-) True XLOC_028861
TCONS_00055889 other upstream 1832190 30974916 ~ 30975079 (-) True XLOC_028862
TCONS_00055890 other upstream 1842630 30985356 ~ 30985519 (-) True XLOC_028863
TCONS_00055891 other upstream 1849155 30991881 ~ 30992044 (-) True XLOC_028864
TCONS_00055892 other upstream 1850460 30993186 ~ 30993349 (-) True XLOC_028865

Expression Profile

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