RNA id: TCONS_00057360


Basic Information

Item Value
RNA id TCONS_00057360
length 682
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id XLOC_028833
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 29146105 ~ 29147779 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCgagcggaggcggaacagggggaggaCCTGGAGTAATGCGGGTCAAGCCGGCAGAGCTGGAGGCTTGTGGGGAGCTGGCAGAGCGAGCcatctgggtggcgccggcagggcgagtaGTCTGGCTAGGATCGCCAAGGCGAGGAGCTGTGGCCGTTCGGGAAGCTTAGGAGGCGGCGGCccttcgggaagctcaggcggcagcGACTCTGGCAGCGGCGTCGACTCTAGCTGCGGCGTCAACTCTGGCTAGGGCACTGGCTGCGGCGGAtactctggctgaggcgctggttGCGGCggcgactctggctgcggcgtcgactctggctgaggcgctggctgagGCGTCGACTCTTAAAATGTTACCAGTGAAACCTAAAGTGACCTAATGGGGACTTAATGTATGGAAAGTCTTAAAGATATTGAAATGTACTTTAATTGCTCTATTTAACCTGTTAAAATAACTACTTTTGATGGGTACAttgtgcttttgtgtgttttCACAGAACTATTTTCCTTGGTCAGCTGGAGGGGGAAAAATTGTGCAGGAAAAGGAATTGATTATTCCCTTTGAGAAAACTGACGCCTGTTTATCTGCCATGAAACTAAAAGTGAAGGAACCCTGGCATAAGAGGTTCGTCTTATTGGAAACAGAACTCTACGCGAATCTTTGCAATGACTGA

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0044091 membrane biogenesis biological_process
GO:0042391 regulation of membrane potential biological_process
GO:0048741 skeletal muscle fiber development biological_process
GO:0048468 cell development biological_process
GO:0048747 muscle fiber development biological_process
GO:0022607 cellular component assembly biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0030154 cell differentiation biological_process
GO:0001765 membrane raft assembly biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0048513 animal organ development biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0007271 synaptic transmission, cholinergic biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0031579 membrane raft organization biological_process
GO:0070836 caveola assembly biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0014902 myotube differentiation biological_process
GO:0014904 myotube cell development biological_process
GO:0007009 plasma membrane organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0045214 sarcomere organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0044854 plasma membrane raft assembly biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0044857 plasma membrane raft organization biological_process
GO:0071709 membrane assembly biological_process
GO:0030029 actin filament-based process biological_process
GO:0003015 heart process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0016043 cellular component organization biological_process
GO:0042383 sarcolemma cellular_component
GO:0045121 membrane raft cellular_component
GO:0098857 membrane microdomain cellular_component
GO:0098590 plasma membrane region cellular_component
GO:0005892 acetylcholine-gated channel complex cellular_component
GO:0005901 caveola cellular_component
GO:0005912 adherens junction cellular_component
GO:0005924 obsolete cell-substrate adherens junction cellular_component
GO:0005925 focal adhesion cellular_component
GO:0044853 plasma membrane raft cellular_component
GO:0070161 anchoring junction cellular_component
GO:0030054 cell junction cellular_component
GO:0030055 cell-substrate junction cellular_component
GO:0030056 hemidesmosome cellular_component
GO:0022848 acetylcholine-gated cation-selective channel activity molecular_function
GO:0030506 ankyrin binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function
GO:1904315 transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function
GO:0005231 excitatory extracellular ligand-gated ion channel activity molecular_function
GO:0098960 postsynaptic neurotransmitter receptor activity molecular_function
GO:0099529 neurotransmitter receptor activity involved in regulation of postsynaptic membrane potential molecular_function
GO:0015464 acetylcholine receptor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055857 lncRNA downstream 3379 29139745 ~ 29142726 (-) True XLOC_028832
TCONS_00058226 lncRNA downstream 286290 28829894 ~ 28859815 (-) False XLOC_028829
TCONS_00058227 lncRNA downstream 296413 28846944 ~ 28849692 (-) True XLOC_028829
TCONS_00058225 lncRNA downstream 390402 28753942 ~ 28755703 (-) True XLOC_028828
TCONS_00058224 lncRNA downstream 418065 28719229 ~ 28728040 (-) True XLOC_028827
TCONS_00058228 lncRNA upstream 114184 29261963 ~ 29264156 (-) False XLOC_028834
TCONS_00058229 lncRNA upstream 114184 29261963 ~ 29264187 (-) False XLOC_028834
TCONS_00058230 lncRNA upstream 114184 29261963 ~ 29264199 (-) False XLOC_028834
TCONS_00055858 lncRNA upstream 114184 29261963 ~ 29264454 (-) True XLOC_028834
TCONS_00058231 lncRNA upstream 528255 29676034 ~ 29683905 (-) False XLOC_028835
TCONS_00055853 mRNA downstream 95522 29032643 ~ 29050583 (-) False XLOC_028831
TCONS_00055855 mRNA downstream 95522 29037808 ~ 29050583 (-) False XLOC_028831
TCONS_00055854 mRNA downstream 95522 29037808 ~ 29050583 (-) False XLOC_028831
TCONS_00055856 mRNA downstream 95870 29041259 ~ 29050235 (-) True XLOC_028831
TCONS_00055852 mRNA downstream 187504 28951558 ~ 28958601 (-) True XLOC_028830
TCONS_00055859 mRNA upstream 505717 29653496 ~ 29676080 (-) False XLOC_028835
TCONS_00055860 mRNA upstream 605568 29753347 ~ 29753895 (-) True XLOC_028837
TCONS_00055861 mRNA upstream 610510 29758289 ~ 29769304 (-) True XLOC_028838
TCONS_00055862 mRNA upstream 672609 29820388 ~ 29821139 (-) True XLOC_028839
TCONS_00055863 mRNA upstream 680889 29828668 ~ 29833326 (-) True XLOC_028841
TCONS_00055851 other downstream 290428 28829894 ~ 28855677 (-) False XLOC_028829
TCONS_00055850 other downstream 603970 28542021 ~ 28542135 (-) True XLOC_028825
TCONS_00055849 other downstream 713660 28432331 ~ 28432445 (-) True XLOC_028824
TCONS_00055832 other downstream 2004802 27141179 ~ 27141303 (-) True XLOC_028817
TCONS_00055829 other downstream 2046820 27088371 ~ 27099285 (-) True XLOC_028815
TCONS_00055888 other upstream 1807562 30955341 ~ 30955504 (-) True XLOC_028861
TCONS_00055889 other upstream 1827137 30974916 ~ 30975079 (-) True XLOC_028862
TCONS_00055890 other upstream 1837577 30985356 ~ 30985519 (-) True XLOC_028863
TCONS_00055891 other upstream 1844102 30991881 ~ 30992044 (-) True XLOC_028864
TCONS_00055892 other upstream 1845407 30993186 ~ 30993349 (-) True XLOC_028865

Expression Profile

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