RNA id: TCONS_00058228



Basic Information


Item Value
RNA id TCONS_00058228
length 978
lncRNA type intronic
GC content 0.40
exon number 2
gene id XLOC_028834
representative False

Chromosome Information


Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 29261963 ~ 29264454 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


GTAAATCCTATCACAAAATCGATGAAATGTTAAGATAACATGTTACTCAAGTGTGTTTACAAGTTTAGTGAGGTAACGTGCAGTTAAAGAGTTAATTAGTGGTGAAGATTGTATCTGTTTGCTGACATTGTATGAAAACGGCAGTTAGCGGCCGGTTGTGTTATATGATAACTGCAAAGTTAACTAAAGGGCTCCACCACGCTGAAATCCTCTGTAAACGTTATGTTTTTGTATTCAAGTTGTTAAAAACGATAATAATATCACTTTTGATTGTATAAATACACTTGGTTTAAGACGAGGGTTACAACGACTGTAACAGATTTGTTTACGTTTGGATTACACAGAGCTGTCCCAGAGATGCAGAGCAGATGTACGATACTGTGCTGACACCCCACTAGCCTAGCAACTGCTAGAAGGGCTCTGACCAGATAAAAAGGTCATTAGGGGCATGCTGATCTGCAAAGCATTTAAAGACGCTGTAACAAAAATCAGCAAAGGAACAGCTTCCCAAGTAGAAGCAACAATAAAGTCATGGTTAAGAAAGTCAAGAGACAGAGATGGTGGGCGCCAAGGAAGGGCCAAAACTCAGAAGGGActtacttttaattaattttttggaGTTAAAAAATTGCgttttcttttgtgtgtttattcacgtttgattttgtataaaatataattctgttTCAATATCATACAgttgttcattttttgttattaaactctgtaaataaatatttactaacatgacccAGTTTATTGTCAAGTAAAACTGTTCtgaaaatgcattgtataatggTTTTCTGTATGTACAAAGTAGAACCAGACTCAGTGGCTCAGACAGGATCATTGCGAGCCGCCCACTGTGGGCCCAATGGTGTGGGCTGACTGTGGGACCCACACTGTGGGGCACTTGTGGGGCCCCTTTGGGACAGCCCAAAAGTGTGGGCCGACTGTGGGCTATCCCACACTAATCAG

Function


GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0048468 cell development biological_process
GO:0021546 rhombomere development biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0055001 muscle cell development biological_process
GO:0021593 rhombomere morphogenesis biological_process
GO:0021594 rhombomere formation biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0001501 skeletal system development biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0006413 translational initiation biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0030902 hindbrain development biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0048704 embryonic skeletal system morphogenesis biological_process
GO:0048705 skeletal system morphogenesis biological_process
GO:0048706 embryonic skeletal system development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00057360 lncRNA downstream 114184 29146105 ~ 29147779 (-) False XLOC_028833
TCONS_00057361 lncRNA downstream 114184 29146109 ~ 29147779 (-) True XLOC_028833
TCONS_00055857 lncRNA downstream 119237 29139745 ~ 29142726 (-) True XLOC_028832
TCONS_00058226 lncRNA downstream 402148 28829894 ~ 28859815 (-) False XLOC_028829
TCONS_00058227 lncRNA downstream 412271 28846944 ~ 28849692 (-) True XLOC_028829
TCONS_00058231 lncRNA upstream 411878 29676034 ~ 29683905 (-) False XLOC_028835
TCONS_00058232 lncRNA upstream 418307 29682463 ~ 29683905 (-) True XLOC_028835
TCONS_00058233 lncRNA upstream 441037 29705193 ~ 29707219 (-) True XLOC_028836
TCONS_00058234 lncRNA upstream 557164 29821320 ~ 29821700 (-) True XLOC_028840
TCONS_00058235 lncRNA upstream 701122 29965278 ~ 29967040 (-) False XLOC_028842
TCONS_00055853 mRNA downstream 211380 29032643 ~ 29050583 (-) False XLOC_028831
TCONS_00055855 mRNA downstream 211380 29037808 ~ 29050583 (-) False XLOC_028831
TCONS_00055854 mRNA downstream 211380 29037808 ~ 29050583 (-) False XLOC_028831
TCONS_00055856 mRNA downstream 211728 29041259 ~ 29050235 (-) True XLOC_028831
TCONS_00055852 mRNA downstream 303362 28951558 ~ 28958601 (-) True XLOC_028830
TCONS_00055859 mRNA upstream 389340 29653496 ~ 29676080 (-) False XLOC_028835
TCONS_00055860 mRNA upstream 489191 29753347 ~ 29753895 (-) True XLOC_028837
TCONS_00055861 mRNA upstream 494133 29758289 ~ 29769304 (-) True XLOC_028838
TCONS_00055862 mRNA upstream 556232 29820388 ~ 29821139 (-) True XLOC_028839
TCONS_00055863 mRNA upstream 564512 29828668 ~ 29833326 (-) True XLOC_028841
TCONS_00055851 other downstream 406286 28829894 ~ 28855677 (-) False XLOC_028829
TCONS_00055850 other downstream 719828 28542021 ~ 28542135 (-) True XLOC_028825
TCONS_00055849 other downstream 829518 28432331 ~ 28432445 (-) True XLOC_028824
TCONS_00055832 other downstream 2120660 27141179 ~ 27141303 (-) True XLOC_028817
TCONS_00055829 other downstream 2162678 27088371 ~ 27099285 (-) True XLOC_028815
TCONS_00055888 other upstream 1691185 30955341 ~ 30955504 (-) True XLOC_028861
TCONS_00055889 other upstream 1710760 30974916 ~ 30975079 (-) True XLOC_028862
TCONS_00055890 other upstream 1721200 30985356 ~ 30985519 (-) True XLOC_028863
TCONS_00055891 other upstream 1727725 30991881 ~ 30992044 (-) True XLOC_028864
TCONS_00055892 other upstream 1729030 30993186 ~ 30993349 (-) True XLOC_028865

Expression Profile


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