RNA id: XM_036968142.1


Basic Information

Item Value
RNA id XM_036968142.1
length 2206
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC110509589
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 8209282 ~ 8216845 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTCGCTTGATCTAGCGCGCACGAAACATCCAATGGACTACAACTACTCAgtcacatttttatttgaccttcagTGGGAGGGTACAGAGCCGAATCAAGCATGGCAGCCGGAGTTTTTACCAAAGGTTTGTGCGGGCTCCATCACCCCTGGCTTGTTGCAGCCGGATATTCCTGTAGTGGACCGCTCTGTGCGACTGCTGTGGCCGTCAAAACACTCCCCTTGCAAACTGACAGCACAAGTAGGCAGTTatGTCACTGACAAGATCCTGAACCTTCCCCTTGAAATGCCAGATTTCTTCCGCTTGTCAGAACTGTTCTCCTTGAAAGATCTATTCGATGCCAGAGTTCACCTCGGCCACTAGAAAGGCTGCGCAGACAGGCTGATGGAGCCCTACCTATTCGGCAGTCGTCTGGACCAAGACATCATCGACCTAGACCAGACAGTGGAGCACCTCCAGAGCGCCCTAAACTTTACCGCCCACATCGCCTACCGTGGCAGTGTCATCCTCTTCGTCTCACGCCGCCGCCAGTTTGGTCACCTGGTGGAGAGCACGGCGCAAGACTGCGGAGAATATGCCCACACACGCTACTGGCAGGGCGGCCTGCTCACCAATGCACCCATCCAGTATGGCCCGGGGGTTCGGCTGCCTGACCTCATAGTCTTCTTCTCAACGCTCAACAACGTCTTCCAGCAGCACGTGGGGGTCCGCGATGCGGCCAAGATGAATATACCCACAGTGGGGCTGGTGGACTCTAACTGCAACCCCAGCCTGGTGACTTACCCGGTGCCTGGGAATGACGACACACCAGCCGCTATGGAGTTGTACTGCCGCCTGTTCAAGATGACCATCAACCGAGCCAAGGACAAGAGGAGACAGATGGAGCTGCTGCAGGGTCGATCAGCAGTGGGCCTCACAACAAGCTCCTAGTGAGCGGCAACAAGTGGGAATGAAGGGCCCCTGTTTGAGTTCTTTGAAAATGCATTCTTCTTTACTCCCTTGAAGTAATACCTGATCTGAAGTAACAGGATAGGTGAAATCTTTACCTTTTGGCTAAGAGAGTAGTATCTGGAGGCAAGTGTTCCACTTCTTAGTTTGCCCCAACATATGGATATCAGATTATGGATTTATGACAAAGAAGAGAAGATAGAGGATTCATTTTCAGTATTTGAACATGGACAAGGACATGGACATTACTGCTAAAATACTCTGAATACTCTGAAGCATCATGTTTCAGCAACAGATTTGGTGAATTTGTACAGAATTGTTGCTCTTTTTCTAGATGTATCTGGAGAAACTGGTGTACAAAATGTGTAATTCCAATGTTTGTTCCATCATCAACTGATCCAGGTTTGATCAGCATGTTTCCATAATATTGCTAAATCTCAGCTTGTTTTTCATTGTCTGGTCAAATTCAATGAAAAAAATAGCATTTCTGTATCAAATGACATGATTGCACTACACTCATTCTATATATCAAGCAAACTTTATTTTCACAAAATTTGTTTGGTCTCTTTTGTATGTATTTTTCTACACGCACACTTAGTGGTTTTTAATACTGGGCTAAAATCTTAGTGTACAAGTCATGTCCAACTAGTGCAAAAAAAAACTATTACTTTGGCAATGACTAAATTCATCTAATTCTTGTGCCAATAAAATGTATAGCTATGGCATGTTTATTATTACATATGAAAACATGAAACTTACACCAAGCAGAGTGATCATGGTGACTCCAGTGGAAGGGTTATTGCACCCACTGTATAGCAATCAACATATCAGATGTCTTCATCGTAGCTTCTATTTTTGGTCAACTtaaaccatgtttccatccagttTTTATGTGAGTTAAGTCCTGTCGTATTTAAAAACCAGGACAGCTGTTTTGGAAACAGGAAATGTAAGTAGAATTTTATGAGGACAGATCATTTGTTTGTTgaacatggtgggatctttttgcgTCTGTAAAGTTAATTATGTGTAATGGCAGTGGAAacacctttatgcgcaaatattgaaaTGATAACCCTCCTATCGTAGTAAATTTGGAgtggtgataatatggtgtgtgtttctcccacTACGACTCGCAAGACTATTAagttttattaggctacagattaaatattGTAAATAATGATGAACTTCACCGGATGGTGAAGGTGCACTGTGAtattgatgctcctttccaataaatattgtgggtctta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2456477 lncRNA downstream 2718 8202769 ~ 8206564 (-) False G2148048
TU2456478 lncRNA downstream 2718 8202769 ~ 8206564 (-) False G2148048
TU2456481 lncRNA downstream 2718 8202769 ~ 8206564 (-) False G2148048
TU2456482 lncRNA downstream 2718 8202769 ~ 8206564 (-) False G2148048
TU2456483 lncRNA downstream 2718 8202769 ~ 8206564 (-) False G2148048
TU2456704 lncRNA upstream 216701 8433546 ~ 8464718 (-) True G2148247
TU2456711 lncRNA upstream 226187 8443032 ~ 8529631 (-) True G2148253
TU2456814 lncRNA upstream 367712 8584557 ~ 8584921 (-) True G2148352
TU2456834 lncRNA upstream 395162 8612007 ~ 8612250 (-) True G2148371
TU2457119 lncRNA upstream 649305 8866150 ~ 8867572 (-) True G2148626
XR_005040376.1 mRNA downstream 631 8202543 ~ 8208651 (-) True LOC110509588
XR_005040375.1 mRNA downstream 1648 8202543 ~ 8207634 (-) False LOC110509588
XR_005040377.1 mRNA downstream 1648 8202543 ~ 8207634 (-) False LOC110509588
XR_005040378.1 mRNA downstream 1744 8202543 ~ 8207538 (-) False LOC110509588
XR_005040813.1 mRNA downstream 2808 8206343 ~ 8206474 (-) True LOC118945698
XM_021590572.2 mRNA upstream 7533 8224378 ~ 8232643 (-) True LOC110509590
XM_036967474.1 mRNA upstream 401197 8618042 ~ 8651204 (-) False LOC110509591
XM_021590573.2 mRNA upstream 401197 8618042 ~ 8651918 (-) False LOC110509591
XM_021590574.2 mRNA upstream 401197 8618042 ~ 8678093 (-) False LOC110509591
XM_021590575.2 mRNA upstream 401197 8618042 ~ 8682244 (-) True LOC110509591
TU2456440 other downstream 41251 8130783 ~ 8168031 (-) False LOC110509586
TU2454332 other downstream 1559619 6649178 ~ 6649663 (-) True G2146036
TU2454257 other downstream 1614808 6581191 ~ 6594474 (-) True LOC110509559
TU2453747 other downstream 1956416 6149576 ~ 6252866 (-) True G2145542
TU2453878 other downstream 2060788 6141066 ~ 6148494 (-) True G2145618
TU2458082 other upstream 1148367 9365212 ~ 9437537 (-) True ttc33
TU2459830 other upstream 2501176 10718021 ~ 10799318 (-) True G2151189
TU2460429 other upstream 2734404 10951249 ~ 10969301 (-) True ttll11
TU2460472 other upstream 2776321 10993166 ~ 10993879 (-) True G2151771
TU2460556 other upstream 3025149 11241994 ~ 11244060 (-) True LOC100135966

Expression Profile