RNA id: TCONS_00058233


Basic Information

Item Value
RNA id TCONS_00058233
length 1726
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id XLOC_028836
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 29705193 ~ 29707219 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ccacactgcaggaacaacaacaCAAAGTATGGGGGTAAAGATCTTCTGGTAAAGCCATGTGTGTTTTTTGTGAGACAAAATACACCGATATAATTCAGAACGAAAACTATAATAATGCAGAAACTGTCCCAGAACCGGTTTCAATCTTCAATTCTTTCATAGCTCTACCGTGAAGCACTTTAAACACTTTAAACTGATAGTCAAAATCTACAGTTCTAAACATCTATTGGTCAAAATGGTGTAAAATGTGTaacagtatttgtaatttgttaaatGTAACCAATGAATCATTTGATATCCTGAGAGAAGATGATTACAATTATGCTGGATgcacaaaaaaagacatttaaaatcttttaagaTGAAAATGTGGGACCTCCAATATGGGGACAAAAATCATTCTTTTGATACTATTATATGTTATTGTATGATTTCCTGTTTTCATGTTGCACTATATCTTGCATTTTGCTATCTGGAGTTTTCAAAGTTGTTATGATCATATCCTTGTTAAATGTTTTGCCATCaatgagaaaataataattatttgccATCTCTGCTGTCTGAATCTTTCAGTGCTTCACCATGACTGTGTTTGTCCTGCTTCTGTCAGCTCACTTTCTGACTGAATATCGTTTTAGTTTCATATAATAATCTCCAGATCATACAAGCATTTACTCTTAGGATTAGAATTTCTGATTAAATGTTCAACATGTTGAATATTTACAATTCATGGTCAGAGCAAGCAGATTCAGTCAAACTTCagcattaatatactgtaatactGCTGCTGTGTTCATCATATTCTTTCTTCCCCATAATGCATTATATGATAATAATCAAAGATTTTGAAATAGTTCCATTTCAAATCAATAACTGTTGAGGCCATAATTATTTATGAGGTGAAATGCTGTCTCACTTCTCACTCTTTGGGTGCTTTCATATTCGCTTGGTCTTTACCCGGGTTTGTTTGATGTCAGAGTTCAGtgcgtttagctagtgtgaacgctgtcttctgaactcgggtacCTACCAACAAACCATCCCCAAGCCTGCCTGAAACATGTGATCTGAGGAATGCCTTGCACAAACTCTGGTTCTGTTCACTTCTGAAATTAATGTAATCGTACCAAACAACGAATGTGAACTGCCAACTATACAACAAACTTTAATTTTCACAATGTTCttctgtgtgtgcttgtttgtgtacCACCTAAAGTTGCCTTGCTGGCAAGCaggactgacccagtgcaaaTGCAgtaataatgtctgcttgtctcctccaaaaatgacttctgcagacattgcgttatgttctgaatgttttaatatgtttgcAGCAGATAGATACAAGTGGCTCTCTGTATGttaccaaaaccaaaagattcgaTAAAGCTGATCGACTGCGATGTGCATaagtctttccattttggcgcgATGGCTTTGTGGgtgtcacctagcaacagctgacacacaacagcagcttgatgacacaAGCATATCAGGTTTCAGAAGGAAAAATCAcaatgtgaacacaaaccagctgaGAAAATGGCAAGGGAACACAATCAAACTTGGGTTCAGTCCAGgtattgaaccaagtgtgaaagcaccctttgtCTCACTGAACGATTaagtcagtggtcaccaaacttgttcctggagggctgatgttctgcagattttagttccaaccctaatcaggcACAGCTGAATAAGCTAATCAagg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058231 lncRNA downstream 21288 29676034 ~ 29683905 (-) False XLOC_028835
TCONS_00058232 lncRNA downstream 21288 29682463 ~ 29683905 (-) True XLOC_028835
TCONS_00055858 lncRNA downstream 440739 29261963 ~ 29264454 (-) True XLOC_028834
TCONS_00058230 lncRNA downstream 440994 29261963 ~ 29264199 (-) False XLOC_028834
TCONS_00058229 lncRNA downstream 441006 29261963 ~ 29264187 (-) False XLOC_028834
TCONS_00058234 lncRNA upstream 114101 29821320 ~ 29821700 (-) True XLOC_028840
TCONS_00058235 lncRNA upstream 258059 29965278 ~ 29967040 (-) False XLOC_028842
TCONS_00058236 lncRNA upstream 258059 29965278 ~ 29967134 (-) True XLOC_028842
TCONS_00058237 lncRNA upstream 396966 30104185 ~ 30104943 (-) False XLOC_028844
TCONS_00055866 lncRNA upstream 397316 30104535 ~ 30112222 (-) False XLOC_028844
TCONS_00055859 mRNA downstream 29113 29653496 ~ 29676080 (-) False XLOC_028835
TCONS_00055853 mRNA downstream 654610 29032643 ~ 29050583 (-) False XLOC_028831
TCONS_00055860 mRNA upstream 46128 29753347 ~ 29753895 (-) True XLOC_028837
TCONS_00055861 mRNA upstream 51070 29758289 ~ 29769304 (-) True XLOC_028838
TCONS_00055862 mRNA upstream 113169 29820388 ~ 29821139 (-) True XLOC_028839
TCONS_00055863 mRNA upstream 121449 29828668 ~ 29833326 (-) True XLOC_028841
TCONS_00055864 mRNA upstream 338274 30045493 ~ 30057608 (-) False XLOC_028843
TCONS_00055851 other downstream 849516 28829894 ~ 28855677 (-) False XLOC_028829
TCONS_00055850 other downstream 1163058 28542021 ~ 28542135 (-) True XLOC_028825
TCONS_00055849 other downstream 1272748 28432331 ~ 28432445 (-) True XLOC_028824
TCONS_00055832 other downstream 2563890 27141179 ~ 27141303 (-) True XLOC_028817
TCONS_00055829 other downstream 2605908 27088371 ~ 27099285 (-) True XLOC_028815
TCONS_00055888 other upstream 1248122 30955341 ~ 30955504 (-) True XLOC_028861
TCONS_00055889 other upstream 1267697 30974916 ~ 30975079 (-) True XLOC_028862
TCONS_00055890 other upstream 1278137 30985356 ~ 30985519 (-) True XLOC_028863
TCONS_00055891 other upstream 1284662 30991881 ~ 30992044 (-) True XLOC_028864
TCONS_00055892 other upstream 1285967 30993186 ~ 30993349 (-) True XLOC_028865