RNA id: XR_002471422.2


Basic Information

Item Value
RNA id XR_002471422.2
length 1375
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC110509356
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 10051204 ~ 10057769 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgtagttgcctgtcagcactattTTGTATAGCGTCACATTTCGTTTGTTCATTTTGTTGGTTTGTTCGGTGTTCATTCAAAGAGAATGTACGCAtccatgctgcgccttggtctcattctAACTACGGACGTGCCAAGTGCACACCTGCGCTTCAACTGTTGAACTTGAGGTCTTGGCAACTGGGCGGCTCGGCTGCCATGATGGCCTTGGCGCCGTGCATTATAGGAAGGAACTTGCAGTGCAACTCACCTCGGGTCTCCTTCCAGCACCGCACCGATGCCAGCTGCTTCTTCTCAATGTTCCGCTCTGACACCGACAGCTCTAGAGTCTGGGACAGAGCATAAGGAGTAGTCGtATGGCTGTGGGTGGTCGTACCTCCTGCACTAGAAGCCCCTCCTGCATGTAGCATGTATCTATGGTCTTGAGGAGCTCCATGGTCTTATACTGGCCCTGACACGTCTTCCGCTTGTCCTGGGAGCCCAACATGCACTTCAACAATACCAGGCCCACCCGGAAATTGATCTTCAATCCTGGACGATCACACACcagacagcagtggtgtaaagtgccTAAGTaaaaatgtaaacaacaacaTTTCAAATTTAGCTacttacagttttttacaatcacacACTAAAAGTGGTATTTGAGGCACACTCAGAGAAACAATTCACTCATGTACCTAATCTTCAAACCAAGTCTGCAAAACTGCAAGCACAATAtctgctttacactcagtttgcAATTGTAAAACACACTTTTTGCAAAACACTAGTTCTCTATATTAGACACTTTGTTCAAAACTAACAGGTCTTGTGCTTCATTTGGAAAGTACTGTCATTCCAAATGCCACACTCATTTACCCATTACCTACACCCAGTGCTGACGTGTGAAAACACTTATAGCTAATATCTTCACTAAGAAATCAGAGGTTGAGCACTATAAATATGCTTCAGGTTGTCTTTCTTGGTTTGGACAACAATGGAGGCCAATTTTGGAGAGCGAGTTAGAGGAGCGAGAgtaagagggggaggaggatgaggacaaggaggaggaagaggataaggaggaggCCTGTGGTGACATAGACGAGGGGGCATGCCAGGGCTGGATACGCCACTCCAGACACTGCTTCCCCCGCTGTTTAGCCAGAGAGAACATCGCTTGTGATGTTTATGATGTGCTGTGGCCAGACAAAAATAGGAGACAGGATGCACCCTAACGGCTTTTTTTTTATATCAACAAGCCTATTTGGTTGTCTCCTACTGTATTTGttttgtctgttactgttcatccTGAAATCTGGatgaaaatacaatgttttgaGAAATAAATACATTACATTTTTTCCACCTTAGATTTCTATTTATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2458292 lncRNA downstream 432029 9618654 ~ 9619175 (-) True G2149729
TU2458270 lncRNA downstream 460195 9590200 ~ 9591009 (-) True G2149707
TU2458188 lncRNA downstream 566423 9482741 ~ 9484781 (-) True G2149628
TU2458121 lncRNA downstream 652637 9346387 ~ 9398567 (-) True G2149564
TU2457602 lncRNA downstream 768872 9237804 ~ 9282332 (-) True G2149072
TU2459062 lncRNA upstream 120404 10178173 ~ 10178671 (-) True G2150466
TU2459209 lncRNA upstream 319991 10377760 ~ 10378011 (-) True G2150605
TU2459226 lncRNA upstream 328751 10386520 ~ 10386722 (-) True G2150622
TU2459240 lncRNA upstream 341177 10398946 ~ 10399207 (-) True G2150636
TU2459263 lncRNA upstream 357833 10415602 ~ 10415960 (-) True G2150659
XM_021590591.2 mRNA downstream 290296 9510367 ~ 9760908 (-) True lamc3
XM_021590589.2 mRNA downstream 291297 9510367 ~ 9759907 (-) False lamc3
XM_036967797.1 mRNA downstream 549785 9461338 ~ 9501419 (-) True aif1l
XM_021590586.2 mRNA downstream 593685 9444050 ~ 9457519 (-) True LOC100653467
XM_021590585.2 mRNA downstream 613761 9383513 ~ 9437443 (-) False ttc33
XM_021590597.2 mRNA upstream 865301 10923070 ~ 10969315 (-) False ttll11
XM_036967575.1 mRNA upstream 865301 10923070 ~ 10969315 (-) False ttll11
XM_036967595.1 mRNA upstream 946321 11004090 ~ 11016768 (-) False LOC110509609
XM_036967594.1 mRNA upstream 946321 11004090 ~ 11017772 (-) False LOC110509609
XM_021590599.2 mRNA upstream 946321 11004090 ~ 11018061 (-) False LOC110509609
TU2458082 other downstream 613667 9365212 ~ 9437537 (-) True ttc33
TU2456440 other downstream 1883173 8130783 ~ 8168031 (-) False LOC110509586
TU2454332 other downstream 3401541 6649178 ~ 6649663 (-) True G2146036
TU2454257 other downstream 3456730 6581191 ~ 6594474 (-) True LOC110509559
TU2453747 other downstream 3798338 6149576 ~ 6252866 (-) True G2145542
TU2459830 other upstream 660252 10718021 ~ 10799318 (-) True G2151189
TU2460429 other upstream 893480 10951249 ~ 10969301 (-) True ttll11
TU2460472 other upstream 935397 10993166 ~ 10993879 (-) True G2151771
TU2460556 other upstream 1184225 11241994 ~ 11244060 (-) True LOC100135966
TU2460707 other upstream 1398849 11456618 ~ 11525152 (-) True LOC110509625

Expression Profile