RNA id: XM_021590605.2


Basic Information

Item Value
RNA id XM_021590605.2
length 2476
RNA type mRNA
GC content 0.52
exon number 14
gene id ddx56
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 11046317 ~ 11053829 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGTCCCGGCTCAAGTGATGGATGACGTATAAGTCAAGCGACGTACACACGTGTCGAAGCCTGGTGGAAGCACTAGAGACAAGAAATGGCTACCGACAGGCTGCAGTTCCATGAAATGGGCATAGATGATCGCATTTTAAAGgCGCTGGCGGACTTGGGCTGGGCTCAGCCCACTTTGATCCAGGAGAAAGCCATTCCACTGGCGCTGGAGGGCAAGGACATTCTAGCCCGGGCCAGGACTGGCTCAGGAAAAACAGCTGCTTACGCTGTGCCCGTCATCCAGCGTATTTTGACATCCAAACAAAATGTCCGTGAGCAGGCAGTGAGAGTGTTGATCCTGGTTCCTACCAAGGAGctggggcagcaggtacaggCCATGATCCGCCAGCTGACTGCCTACTGTGCCAGAGACGTGAGGGTGGCAGACATCTCCGGCAAGGCTGACCTGTCTGCCCAGAGGCCCATCCTGATGGAAAAGCCAGATGTGGTAGTGGGGACCCCCTCTAGGGTTCTGGCCCACCTCAGTGCCCAGAGCCTGGACCTGCAGGCCTCGCTGGAGACCCTGGTCATAGATGAGGCTGACCTGCTCTTCTCCTTCGGCTTCGAGGCCGACCTCAAGAGCCTGCTATGCCACCTGCCAAAGATCTACCAGTCCTTCCTAATGTCAGCTACTCTCAGCGAGGATGTCCAGGCCCTGAAGGAACTGCTGCTGCACAATCCTGTGATTTTAAAGCTGCAGGGCTCCCAGCTGCCAGACAGCTCCCAGCTGCAGCAGTACAGTGTTCAGTGTGAGGAAGAGGACAAGTTCCTGCTCATCTACACCCTGTTGAAACTGCACCTGGTTCAGGGCAAGACCCTGGTGTTTGTTGGGGCAGTGGAGAGGTGCTACAGACtcaaactgttcctggaacagTTCAGCATCCCCACCTGTGTACTCAACTCTGAGCTGCCTGTCCACtccagGTGTCACATCATAACCCAGTTTAACCAGGGGTTCTATGATTACATCATCGCCACGGACGAGCAGGTATTGGCTGATCCCACCACCACAGCGCAGGCTGCCGAGGGGaaagggaagaagaagaagaagaatgcaGGGAGAGCCAAGGACAAGGAGTACGGCGTCTCCAGAGGAATCGACTTCCAGAATGTCTCCAACGTCATCAACTTTGACTTCCCCACCACCGTGGAGTCCTATATCCACCGCGTTGGACGAACGGCACGAGCAGACAACCCAGGCACCGCGCTCACCTTCATCTCACACACAGAGCTCCCCCTGCTGGCAGAGGTGGAGGACGCACTCATTGGCGATAACACTGAGTGTGCTCTGAAGCCGTACGGGTTTAAAATGGAGGAGATTGAGGGCTTCAGATACCGTTGCCGGGATGCCATGAGGTCAGTAACTAAGCAGGCGGTGAGGGAGGCCAGACTGAAAGAGATCAAACAGGAGCTGCTCAACTCAGAGAAACTCAAGACGTACTTTGAGGACAACCCCCGAGACCTGCAGCTGCTGAGGCACGATAAAGACCTGCACCCTGCTGTCATCAAGCCACACCTGAAGAACGTACCAGAATACCTCATCCCTCCGACGCTGAGGGGAGTGGCCAACCCAATGTCtggcaggaagaggaggaggagagagaagcccAAACCTGACGGGGTCGTCAAGACGACCTTTAAGGACTTCCGAGGCAAGAACCCCTTGAAGAGTTTCCACTACACCGGGGGGAGGAGCCGAGGGGGCAAGGCTGGCAAATCCTAGGCCTCCATGTTAACGTGCACCAATCAGACTTGCTGTGCACAGCTGGCCTATGACATCACCAGTTTCCAGATCAGTTCAGGTGGAGAGGAGACAAACTGAGGAAGCCATtgtagactactgagatgcagccggAGTGTCCAACATCAGGGTGGTATTCACTAGACcccaaacggaagaaaaccgaCTGAAACAGGGCGGGACTGCCTGAACttttccaataagaaacacttatTTGAGTTTTGCTACGTCTTGaaacggtgtgcactaatgaataccaCCCACGTTTGAGGAACCTCCCAGCAGCACCGTTACTCCTCTGTCAGTGAACCAACATCCTCGTTTCCATTGTCTGGTTAGAAAACCTTCTGTGAACTCAACAGAATGTCCCTTCCCTCAACACAACAGGTGTTTATCACAGTAATGTAACAATGACTGCATTACTCTGAACTTCCACTGAAGCAAATTACCTTCACTAGTGTTCAAAATCCTAATTTGAAGAACGAAAATTGCCATTTAGTTTCAGTAAGTAACTTTCTATTGTTGAATTGGGATCTCGATTGACTTCCGTAACTGAAATGCAACACCTGTTTTACGACACACGATGTACCTTGAAATGTCCATGTGATTTCAGATGGTTACATGTGGGTATTGTTTCTTTGTAACATAATAATTCAGAAAAGTGTAACATTTTATTAAATGGTTTGTGCTCTTTAA

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K14810 DDX56, DBP9; ATP-dependent RNA helicase DDX56/DBP9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2460477 lncRNA downstream 44290 11001048 ~ 11002027 (-) True G2151776
TU2460474 lncRNA downstream 51250 10994862 ~ 10995067 (-) True G2151773
TU2460467 lncRNA downstream 58803 10987282 ~ 10987514 (-) True G2151766
TU2460441 lncRNA downstream 108435 10937571 ~ 10937882 (-) True G2151742
TU2460440 lncRNA downstream 110626 10935461 ~ 10935691 (-) True G2151741
TU2460534 lncRNA upstream 54933 11108762 ~ 11112463 (-) True G2151821
TU2460540 lncRNA upstream 60205 11114034 ~ 11114383 (-) True G2151827
TU2460548 lncRNA upstream 69897 11123726 ~ 11123978 (-) True G2151835
TU2460552 lncRNA upstream 73773 11127602 ~ 11127803 (-) True G2151839
TU2460515 lncRNA upstream 78311 11132140 ~ 11132494 (-) True G2151802
XM_021590599.2 mRNA downstream 28256 11004090 ~ 11018061 (-) False LOC110509609
XM_021590600.2 mRNA downstream 28256 11004090 ~ 11018061 (-) True LOC110509609
XM_036967594.1 mRNA downstream 28545 11004090 ~ 11017772 (-) False LOC110509609
XM_036967595.1 mRNA downstream 29549 11004090 ~ 11016768 (-) False LOC110509609
XM_036967575.1 mRNA downstream 77002 10923070 ~ 10969315 (-) False ttll11
XM_036968104.1 mRNA upstream 85593 11139422 ~ 11159002 (-) True LOC110509316
XR_005040443.1 mRNA upstream 136741 11190570 ~ 11193499 (-) True LOC118945308
XM_021590611.2 mRNA upstream 161649 11215478 ~ 11218956 (-) True LOC110509613
NM_001124691.1 mRNA upstream 179169 11232998 ~ 11236337 (-) True LOC100136736
NM_001124306.1 mRNA upstream 188165 11241994 ~ 11244005 (-) False LOC100135966
TU2460472 other downstream 52438 10993166 ~ 10993879 (-) True G2151771
TU2460429 other downstream 77016 10951249 ~ 10969301 (-) True ttll11
TU2459830 other downstream 246999 10718021 ~ 10799318 (-) True G2151189
TU2458082 other downstream 1608780 9365212 ~ 9437537 (-) True ttc33
TU2456440 other downstream 2878286 8130783 ~ 8168031 (-) False LOC110509586
TU2460556 other upstream 188165 11241994 ~ 11244060 (-) True LOC100135966
TU2460707 other upstream 402789 11456618 ~ 11525152 (-) True LOC110509625
TU2460859 other upstream 668243 11722072 ~ 11722479 (-) True G2152107
TU2461170 other upstream 887633 11941462 ~ 11944153 (-) False atg10
TU2461172 other upstream 887633 11941462 ~ 11944153 (-) True atg10

Expression Profile