RNA id: XM_021590610.2


Basic Information

Item Value
RNA id XM_021590610.2
length 5107
RNA type mRNA
GC content 0.44
exon number 12
gene id LOC100136324
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 11076465 ~ 11112463 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAATAAATCTAAGTTAGCAATTGGACTTTTTGTCGCAGGTACTCTGACTGCAGTGTTTGGGTTAGTTATTTTATTCGTTGGACCAATCATCATTGACGACCAAATAGTAAAGAACTTAGTAATAGACCCTGAGAATGAGGTGTCCTACACCATGTGGAAGGACATCCCTGTCCCGTTCTTCATGTCTGTCTACTTCTTCAACATCCTCAACCCCACCGAATTCCTGGCGGGAGAGAAACCCATGGTGGAGCAGAGAGGACCCTACGTATACAGGAAGCGTCTTCAGAAGCAGAACATCACGTTCCATCCCAACCATACAGTGTCGTATCTTGAATACAGGAGCTACTTCTTTGAGCCCAGCATGTCAGTGGGCAACGAGTCGGATGTGGTCACCATCCCTAACATGCTGGTGTTGGGTGCGGCGGTGATGATGGACAACATGCCACACGCAGTGCGTCTCTTGCTCAGTGCCACCTTTAAGAGCTTTAAGGAGGGACCCTTCCTAAGCAAGTCTGTAGGGGAGCTGATGTGGGGCTACGACAGCAAGCTGGTGGACTTCCTCAATAAGTGGTTCCCTGGGATGCTGCCCTCCACTGGCAAGTTTGGCCTCTTCTCTGAGTTCAACAACTCCAACACTGGTATGTTCACCGTCCACACTGGGAAGGATGACATCCGGCTGATTCACAAAGTGAACTCATGGAACGGCTTGACCAAGTTGATATATTGGAAGACTCCCCAGTGTAACATGATCAACGGTACAGCAGGACAAATGTGGCCGCCCTTCATGACCAAAGAGTCCACACTGCCGTTCTACAGTCCTGACGCCTGCAGGTCTTTGGAGCTGGTGTATCAGCGTGAGGGGATAATGAAAGGGATTCCCCTCTATCGCTTTGTGGCTCCTAAGACTATGTTGGCTAATGGCTCAGACTACGCTCCCAATGAGGGCTTCTGTCCCTGCAGACAATCTGGCCTCCTCAACGTCAGCAGCTGTCGATCCAACGCCCCAGTGTTCATTTCCCAACCCCACTTCTACAATGCTGACCCTGTGCTGCTGGACTACGTACAGGGACTTCAGCCTACTGAGGACGAACACGGGCTATTCATAGACATCCACCCTgagaCTGGTGTGCCTCTGAATGTGTCTATCCGTCTGCAGCTCAACCTGTACATGAAGAAGGTGTCGGGTATCACGGAAACAGGGAAGATCTCGGAGGTTGTGATGCCCATGATCTGGTTTGAGGAGAATGGCTATATGGACGGTGCCATCGTGAAAACGTTCCACACCAACCTGGTGCTATTGCCAATGGTGATGGTGTACATGCAGTACTGTTTCCTAGGCCTGGGCCTGGCCACTGTTCTGGGAGCTGTACTACTACACTACAGCGGGAAGctataaACTCTCTCACCTGGTCCTGCATCTGCTCCGGGAAACTTTGGAGACCTTCATTCTGTTCAGTACTCACCGGTCAACAGGGAAGGGCAGGACCACCCCGGTTGGTTCTGCTCTCTGGTGGTGTCCCATCCAATCCTCCAATGAGGATCCACTATTGGAATACATCCCCGCATCCTCAGTCGTTGTTATGTGAATCCTTCCTTCGTCTCTTTGTCCTTCCAGTTCCTCCGATGTTTTAACAACTTAGTATCATGTGTTTTTACTATTCCTGAAATGCCATAGGAAACCACACCACTAGATCTGTATTGTtctgctttcctctcctctggtGTGTGTAGAAGTTGCCTGTAtgcacagacctaggatcagatAATCCTACCCTTAGCCTTTTAGGGGAAGAAATGGAAAAGTGACCCAAAATCGGCACCTAAAAGCAACATTCTACAATATCTCACCAGACCAACGAATCAAAAAGTGAACTTGTTTCTGGggtaaattccagtcaattcaggaagtagacTGAATTTCCAACTATCTTCCATGCTTTTCAATTAGGGAAACTGGAATTTGGTTAACTTTCTGACTTGACTGGCATTTAAATGGGATTTACCCCCCAACTCGGGGACAAAGGCTTACCCACTCAGGCTGCTCCAAAAACACATGACTTGTCGGTGTTCCACATGGGATATCATTTGTCTTTTTACCTAAGCACAGtacttgacttgggcaggagctcactggaACTGAGTACCGGCAACTCAAATGTTCTTCTGCTTGAATTCCTGCACCTCCCATTGACTATTAACTCCAAAGTATTAAGGAGTTCTTGCACTTAAATACAAActgtaccagcacccaaaatgagtaccggaaaGTCAAACACTTGCCTAAACATGTCTACACCATCAGATAGAATTCATAGCAAACCGAAGGAAGGGTGTGTGAAAACAAAAGGGATATATATTTACATTACATTCTATTTGGCAGATGTCCTTGAGTGTCCTAAAAGGCATCTTACATAAAATCTGGTGCTGTACATAGGCCTAAATGAAATAGATTTTATGTAATGAATTTGAATGAATTATTTACCGGGGAAATCAAAAAAGAAACTGTCAGCTTACCAATTTCAAAAATAATGGAAGGGTTCTTGCATGTGTCACTTCACACTGATACCATGTGCAGTAAACCGTAGCAATAGCTGTGTAGGCTAGGCTAGACTGTGTAGGATACTCACCGTGAGCCAGCGGGAACTCACTAGCCAACAACGCTCActgtttacaatttttttttttttaagataccATTTCTAAAAGAGGATGTTGGAGCATATGCCATGTTATTTGATCTTAGTGATTTCACCATGAAGggcctcctgtccccctccttttTACTCACGGATCTAATTTAAGGGCCTTTTAAGACATTTTCAGTAAATTTATTAAGCGCTTACAATTTTGTTTTCATTCAacacttcatttttttttttttgaaatgaTGAAATGCTCTTCTCCACTTCGACTCATGGACATCAATCAGTCCAGTGAAAAAGTTATTTAAAAGAATGCTCCGATGTGCCTCGTTAATAATAGGCTATTGTCTTACCCGTGTTAATAGCCTAGCGTGAGACTAATTTTGAAATAGAATCCCTTCTATGTTATTTATAAGGGTAGGCCTACGTGGATAAAACTGGAGCTGTTATTTATAAATGAAAATAGGCAAATGCATGAAACAGTCAAAGCAGTATTTCCAGTCAATGATTTTTAGGAATTGAATTGGAAACAGAACTGTGCCCTGTTTCTCTGCCCATGCATTATAGTTAGGCCCTATAGGCTATCGGTAATTTAATTGTTCATCAGATACTTCATATACAATTAATATTCTCACCCATTACGTTATTGTCAATTTAATCTAGTCTTTATGCTAACTATATGTAAAATTACTTTTGATATGGTTTAGGTGTAGTTTGGTTGGGCCATCGGCTGCACAGACCTGATGGGCAGGGGGGGAATGACATCCTCTTAATATCAACTAGAATTGAGGTTATAAGCATTGCGATTCTAACAACGATCACGTGTTGGACTTATTTAGGACAGGGGTgacagctttaaaaaaaaaatttaaaaaaattaaatggcAGAGTAATTGGAGAAAGTGAATTTCCAGTCAATTACTCTTTTGGCTCTTCTAGTGTTAAAGGGTTACGTTTGTGTCCGCCTAGTCTATAGTCTCCTGGTTGCTGATCCAGAGAAGTTGCCAAGCCTGTTGTGATTATTACTGCTATATCAGTGCGTTTTATGTTCTAGTCTCACTCTAATAATTATAGCTCTACGGTTTATTATGTGTAGTAGGTCTGTTTTTTTTGCCCACCTAAATTTTAGCAGGCCCCGCCGTGAATGGACTTCTGCCTATGCCACTGCCTCgaccccatttttttttttgtttttttgcaatgTTAGGAATAACGCCTCATTCAGAGTAAATTAGTTGACCTAGAAATGTCCCTCTACTGATGGCATAGGCACCAATAATGACTGACTGTTTTACTACACCGAAGTGCCTTTTCAATTGGAAACTTCTCCTTTGCCCAAGCCCAAATTGACTCCTAAACCCTTGCCACTCCATGTAGATTGGAGAGGATTGGATAGCTCTGGTAGATCTGGTAGCTCTGGTAGCTCCACCTTGCCCTCTCTGGATTTTCACCATACAGCAAATGCTCATGGGCGTCCAAggctaggggtcaggggtcaattTGGAATTGGGCCGTTTATGGTGTGTCCTGTGTGTTGTGGCCATAGACCAGGGGTGCTCAAACTTTTGGGCTTGGTGGGCCGAAATATAATCTAAGTTGTGGGCCACGGGCTGAACGTATAAgtatttattaaaataaaatacatttttaaaaaaggatAGCTTTTTAGTAAGCATAAAACAAAATCACACTTCAAAACATTGTAGCCATATAACTTGAAACCCAACTACATTCTGATTACCACCTCACAGGCAAGACAATTTAGTGTGTCCCCTCCCCCAGGGGCCATTTTACAAAtgttgccatgacttatgccatgttcatCTGAGTGCGTGACTAAGTAAACAATCAGTGGGAGGCCCCTGGTGGTTAGGGCCCCTGCGCACATGCCCAGTTGGTAGTTTGGTGATGATTAGTCTTCTACAAGGTTtaggtagtctagccagctatcttaTCTAGCAATAACAAAAATATGTTCCCTGACATGGGCTACATTACCATGAGAGGACAAACCAAATGTTGTTGGCCCTGCCATAGACCATACTGTACACAGTAATAATTCTGTGATTGAATGTAAAGAGCGTAGTACCTAAAAATGCTTGTGTCCAAACTGtctacgtctcaaatggcaccctattccctatataatacactacctttGGCCAGAGTGCACTattagggagccatttgggatgtatgtaTTGGGCAATAGGGTGTCTTTTGGGACACATattggggaatagggtgtcttttGGGATGcatatattgggaatagggtgcgtTTCGGGAGGCACACAAGGGTCTGGATGCATTTCACTGTGTGCTTTTTGACAACGCAGGATCTTTCAATGAGAGAACACAACAGCTGTTGTGAGATTTGTGAATTTGCACCATCGTACTCCTTTAAGTGGCGAGGATAACTTTGTAAATAAATGTGCCATGAATTGGCGTACATTACTTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2459994 lncRNA upstream 71355 11003261 ~ 11005434 (+) True G2151341
TU2459996 lncRNA upstream 74764 11001776 ~ 11002025 (+) True LOC110509607
TU2460011 lncRNA upstream 75018 11001305 ~ 11001771 (+) True G2151358
TU2460000 lncRNA upstream 94429 10981839 ~ 10982360 (+) True G2151347
TU2459966 lncRNA upstream 135049 10941520 ~ 10941740 (+) True G2151315
TU2460072 lncRNA downstream 6886 11119349 ~ 11119550 (+) True G2151415
TU2460074 lncRNA downstream 10480 11122943 ~ 11123211 (+) True G2151417
TU2460078 lncRNA downstream 14800 11127263 ~ 11127564 (+) True G2151421
TU2460054 lncRNA downstream 23447 11135910 ~ 11139663 (+) True G2151397
TU2460081 lncRNA downstream 28291 11140754 ~ 11144758 (+) True G2151424
XM_036967250.1 mRNA upstream 32115 11025749 ~ 11044674 (+) True LOC110509611
XM_021590601.2 mRNA upstream 54118 11021070 ~ 11022671 (+) True LOC110509610
XM_021590598.2 mRNA upstream 73559 10974442 ~ 11003230 (+) False LOC110509607
XM_036968137.1 mRNA upstream 170624 10820182 ~ 10906165 (+) False LOC110509315
XM_036967899.1 mRNA downstream 56122 11168585 ~ 11204291 (+) False LOC110509317
XM_036967900.1 mRNA downstream 61929 11174392 ~ 11204291 (+) True LOC110509317
XM_021590612.2 mRNA downstream 94533 11206996 ~ 11215361 (+) True LOC110509615
XR_005040329.1 mRNA downstream 112613 11225076 ~ 11228621 (+) True LOC118945263
XR_005040511.1 mRNA downstream 197994 11310457 ~ 11313974 (+) False LOC110509616
TU2459342 other upstream 614569 10461753 ~ 10462220 (+) True G2150729
TU2458634 other upstream 767710 10302688 ~ 10309079 (+) True LOC110509604
TU2457713 other upstream 1702277 9374000 ~ 9374512 (+) True G2149183
TU2457230 other upstream 2044494 8957803 ~ 9032295 (+) False LOC118945282
TU2460223 other downstream 247922 11360385 ~ 11366492 (+) True G2151555
TU2460909 other downstream 651761 11764224 ~ 11766351 (+) True G2152150
TU2461440 other downstream 1188329 12300792 ~ 12307438 (+) True G2152639
TU2462149 other downstream 1647417 12759880 ~ 12760490 (+) True G2153316
TU2463200 other downstream 2555826 13668289 ~ 13669170 (+) True G2154294

Expression Profile