RNA id: XM_036968104.1


Basic Information

Item Value
RNA id XM_036968104.1
length 1797
RNA type mRNA
GC content 0.49
exon number 7
gene id LOC110509316
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 11139422 ~ 11159002 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCACATAGTCTGAGTCCATCCCAGCCCGCGCGCGGAGAGAAAACACTGACACAAGGTTTAGGCCTACCGTTGACGTCAAACTTAACACGAATAACAGAGAGCCAAGACCATTTCACCGGTAACTCTGATTCCGAGAATTTCGTGTGGATTTGGGAGAGAGAAGTGCGTACACTTGACCAGTGACCCAGGCAATAGAAGAAAGTAACTGCATGACTGCTACGATCAACATTCCAATCACTTTCTTTTGTCTTTTTTTTCGGTCACAGTCAAAATATTTTGGGTGTTATAACCCTCGGCAATTTTTTTTTCAGAGCCGTAAAGAATACTTTTGTTGTTGTGAAacaatcaaaaatatatttttttatcacacTAAATTAGGCAACTGGAAATATCTAAACATATTATTAAATATAATATTTATTATTTTAGCATATAATATCTGGATTCTTACTCTTTCAACATCAAAGCTCTGAGATCCGAAAATGGACTTGCTGTTGAACATGACGGATTACTACCCTTCCGTTAACGCCACTAACGGCTCCGATTTGAACGACACAGAAGACTATAACCAGTTCGTGCAGCCGGTGTGGCAGATCGCTCTTTGGGCAGTCGCCTACTGCAGCATGGTGTGCGTCTCCATGATCGGTAACCTGGTGGTCATCTGGATCATCCTCGCGCACAAACGCATGAGGACCGTGACCAACTACTTCCTGgTGAACCTAGCCTTTGCAGAGGCGTCCATGTCTGCCTTCAACACAGTGATAAACTTTGCCTACAGTGTCCATAACGAGTGGTACTTTGGTCTGGGCTACTGTCGCTTCCATAACTTCTTCCCCATCGCAGCTGTCTTCGCCAGCATATACTCCATGACCGCCATAGCACTGGACAGATACATGGCTATCATCCACCCCTTGAGGCAGAGGTTGTCTTCGACAGAGACCCGTGTAGTGATCGGAGTGATCTGGGTGTTAGCTCTACTGTTGGCCTTCCCCCAGTACTTCTACTCAGCTACAGAACAGCTGCCTGGTAGGACTGTCTGCTACATCCAATGGCCCGACTACACCAACAACACAACCATGGACTTCAAGAAGATGTACTATTTGTCTGTTGTGTTGCTTTACTATTTCCTGCCGCTGTGCATTATGGGATGTGCCTACCTGGTGGTGGGCTTGTCCCTGTGGGCGGGGACAATCCCTGGAGACTCCACCCACCGCTACCGAGAACAGCTCATCGCCAAACGCAAGGTAGTGAAGATGATGATCGTGGTGGTGTGTACGTTTGCGGTGTGCTGGCTGCCGTACCACATCTACTTCCTGCTCCAGCAGTTCCACCCTGACCCCATGCAGCTGTTCGAGTGGCGCTACATCCAGCAGGTCTACCTGGCTGTCATGTGGTTGGCCATGAGCTCCACCATGTACAACCCTATCATCTACTGCTGTCTCAATGACAGGTTCAGAGCAGGCTTTCAGCAGGTGTTCTGTTGGTGTCCGTGTGTTCCTGCAGGCTCCTACGAGGGACTGGAACTCAAGTCCACCAGCTACCTACaaactcagGTGAGTGTGTACCGAGCCAGCCGGACGGAGACCAGTGTGTCGACGGTTCTGCAACCTACTGAGGAGGAGTGCTGTGGGGCCGAGCTGCCAGCTAGCGCCCCTATCAGCCAGACAACTCTGGAGCTCACCTCCATGGACTCACAATCAGCCCCAAAcacccccgacagccctgttttTTTGCGGCCGACGCAACATGGATTAGTAGCTCAATAAACGCCTAACTGGGCTGGTGTCTGAAACATT

Function

GO:

id name namespace
GO:0007217 tachykinin receptor signaling pathway biological_process
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004995 tachykinin receptor activity molecular_function

KEGG:

id description
K04222 TACR1; tachykinin receptor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2460512 lncRNA downstream 5726 11132594 ~ 11133696 (-) True G2151799
TU2460515 lncRNA downstream 6928 11132140 ~ 11132494 (-) True G2151802
TU2460552 lncRNA downstream 11619 11127602 ~ 11127803 (-) True G2151839
TU2460548 lncRNA downstream 15444 11123726 ~ 11123978 (-) True G2151835
TU2460540 lncRNA downstream 25039 11114034 ~ 11114383 (-) True G2151827
TU2460570 lncRNA upstream 80771 11239773 ~ 11240108 (-) True G2151845
TU2460571 lncRNA upstream 81210 11240212 ~ 11240547 (-) True G2151846
TU2460626 lncRNA upstream 86234 11245236 ~ 11252463 (-) True G2151894
TU2460661 lncRNA upstream 158597 11317599 ~ 11326837 (-) True LOC110509360
TU2460645 lncRNA upstream 194232 11353234 ~ 11354570 (-) True LOC110512753
XM_021590605.2 mRNA downstream 85593 11046317 ~ 11053829 (-) True ddx56
XM_021590604.2 mRNA downstream 85594 11046317 ~ 11053828 (-) False ddx56
XM_021590599.2 mRNA downstream 121361 11004090 ~ 11018061 (-) False LOC110509609
XM_021590600.2 mRNA downstream 121361 11004090 ~ 11018061 (-) True LOC110509609
XM_036967594.1 mRNA downstream 121650 11004090 ~ 11017772 (-) False LOC110509609
XR_005040443.1 mRNA upstream 31568 11190570 ~ 11193499 (-) True LOC118945308
XM_021590611.2 mRNA upstream 56476 11215478 ~ 11218956 (-) True LOC110509613
NM_001124691.1 mRNA upstream 73996 11232998 ~ 11236337 (-) True LOC100136736
NM_001124306.1 mRNA upstream 82992 11241994 ~ 11244005 (-) False LOC100135966
XM_036967953.1 mRNA upstream 91267 11250269 ~ 11300824 (-) False LOC110509318
TU2460472 other downstream 145543 10993166 ~ 10993879 (-) True G2151771
TU2460429 other downstream 170121 10951249 ~ 10969301 (-) True ttll11
TU2459830 other downstream 340104 10718021 ~ 10799318 (-) True G2151189
TU2458082 other downstream 1701885 9365212 ~ 9437537 (-) True ttc33
TU2456440 other downstream 2971391 8130783 ~ 8168031 (-) False LOC110509586
TU2460556 other upstream 82992 11241994 ~ 11244060 (-) True LOC100135966
TU2460707 other upstream 297616 11456618 ~ 11525152 (-) True LOC110509625
TU2460859 other upstream 563070 11722072 ~ 11722479 (-) True G2152107
TU2461170 other upstream 782460 11941462 ~ 11944153 (-) False atg10
TU2461172 other upstream 782460 11941462 ~ 11944153 (-) True atg10

Expression Profile