RNA id: XR_005040443.1


Basic Information

Item Value
RNA id XR_005040443.1
length 663
RNA type mRNA
GC content 0.56
exon number 4
gene id LOC118945308
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 11190570 ~ 11193499 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGGACCAGGGTGAAGAGATGGACTCTCCTCAGAGGAACGTGACGCAGGAAGGAGAAGTCTGGCTGGTGCTTGGCTGGCATCAGATACAGCTTGATACGCTCCCAGAactaggagggagagaggagGAACTGGGGCTGCTCTCCTGGGGCGCTGGACTCACTCTCCATCTTCAGAGAGTCGATGTGGGCGATGGAGATGACAGTTGCAGCCACGTACCAGGGCAGGCCCAGGAAGGAACACACTGCCATCAGAATACCCACCCAGAACAGGTCCAGATGCCACGAACAGAGTGTGATGGAGAGGATTCGCCGACGGGCTACGCTCCCTTGGGAGAGACAAGCCTAAGTAAGTAAGTGTGTTCATGGTtgcagttgtgttgtgttgtcattgTGGCCACACTGTACCTTGAGTTTGTTCTCTTTGCGGTTGACGATGACGGCGCTGATCTGTTGGTCCATGAAGATGAGGATGGTGACCAGGAGAGCAGGGACGGCGCTGGCCACATACACCCACCACGGGTTCTTACCAAACGGCATCACCACCCAGCCACGGAAGAAGGAAGAGATCGAGAAGGAGAGAACGAGCGGAAGAGAGGGTGTGACAGAGcaagagatgaggggaggagaggaacctTGACTTCAGTGGGCACGTGCAGTTTGGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2460512 lncRNA downstream 56874 11132594 ~ 11133696 (-) True G2151799
TU2460515 lncRNA downstream 58076 11132140 ~ 11132494 (-) True G2151802
TU2460552 lncRNA downstream 62767 11127602 ~ 11127803 (-) True G2151839
TU2460548 lncRNA downstream 66592 11123726 ~ 11123978 (-) True G2151835
TU2460540 lncRNA downstream 76187 11114034 ~ 11114383 (-) True G2151827
TU2460570 lncRNA upstream 46274 11239773 ~ 11240108 (-) True G2151845
TU2460571 lncRNA upstream 46713 11240212 ~ 11240547 (-) True G2151846
TU2460626 lncRNA upstream 51737 11245236 ~ 11252463 (-) True G2151894
TU2460661 lncRNA upstream 124100 11317599 ~ 11326837 (-) True LOC110509360
TU2460645 lncRNA upstream 159735 11353234 ~ 11354570 (-) True LOC110512753
XM_036968104.1 mRNA downstream 31568 11139422 ~ 11159002 (-) True LOC110509316
XM_021590605.2 mRNA downstream 136741 11046317 ~ 11053829 (-) True ddx56
XM_021590604.2 mRNA downstream 136742 11046317 ~ 11053828 (-) False ddx56
XM_021590599.2 mRNA downstream 172509 11004090 ~ 11018061 (-) False LOC110509609
XM_021590600.2 mRNA downstream 172509 11004090 ~ 11018061 (-) True LOC110509609
XM_021590611.2 mRNA upstream 21979 11215478 ~ 11218956 (-) True LOC110509613
NM_001124691.1 mRNA upstream 39499 11232998 ~ 11236337 (-) True LOC100136736
NM_001124306.1 mRNA upstream 48495 11241994 ~ 11244005 (-) False LOC100135966
XM_036967953.1 mRNA upstream 56770 11250269 ~ 11300824 (-) False LOC110509318
XM_036967954.1 mRNA upstream 56770 11250269 ~ 11300824 (-) True LOC110509318
TU2460472 other downstream 196691 10993166 ~ 10993879 (-) True G2151771
TU2460429 other downstream 221269 10951249 ~ 10969301 (-) True ttll11
TU2459830 other downstream 391252 10718021 ~ 10799318 (-) True G2151189
TU2458082 other downstream 1753033 9365212 ~ 9437537 (-) True ttc33
TU2456440 other downstream 3022539 8130783 ~ 8168031 (-) False LOC110509586
TU2460556 other upstream 48495 11241994 ~ 11244060 (-) True LOC100135966
TU2460707 other upstream 263119 11456618 ~ 11525152 (-) True LOC110509625
TU2460859 other upstream 528573 11722072 ~ 11722479 (-) True G2152107
TU2461170 other upstream 747963 11941462 ~ 11944153 (-) False atg10
TU2461172 other upstream 747963 11941462 ~ 11944153 (-) True atg10

Expression Profile