RNA id: TCONS_00058234


Basic Information

Item Value
RNA id TCONS_00058234
length 381
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id XLOC_028840
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 29821320 ~ 29821700 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTACCTGGAAGCTGTTATCATGCTGAAGCTAGTCCAGCAGCCTGGAATTGTGACACACATGACtgtaagtgtttgtttttccctACATTCTCTTCTTTGTTCTTATATGCTTCATCGATGTGCAAAACTGTCTGTTTGCAGGTTGAGGATTGGGAGGGGAGAAGCCGGATAGAGAATGGTGTCTGTGTTGCAGTGAAGGAGCACAAAGTACCGTTGTCACACGAACAGGAACTTGTAAGTTTATATTgtcttttatatcatttttaaatCATAACAGCAATAAATATATTGTGGCAAAGTCAtacttatttttttcctttctttaacTAGTGGTTCGACTTGTACTTCAATGAGGTGCGGCCAGTAATGCTGCAAGAAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058233 lncRNA downstream 114101 29705193 ~ 29707219 (-) True XLOC_028836
TCONS_00058231 lncRNA downstream 137415 29676034 ~ 29683905 (-) False XLOC_028835
TCONS_00058232 lncRNA downstream 137415 29682463 ~ 29683905 (-) True XLOC_028835
TCONS_00055858 lncRNA downstream 556866 29261963 ~ 29264454 (-) True XLOC_028834
TCONS_00058230 lncRNA downstream 557121 29261963 ~ 29264199 (-) False XLOC_028834
TCONS_00058235 lncRNA upstream 143578 29965278 ~ 29967040 (-) False XLOC_028842
TCONS_00058236 lncRNA upstream 143578 29965278 ~ 29967134 (-) True XLOC_028842
TCONS_00058237 lncRNA upstream 282485 30104185 ~ 30104943 (-) False XLOC_028844
TCONS_00055866 lncRNA upstream 282835 30104535 ~ 30112222 (-) False XLOC_028844
TCONS_00055867 lncRNA upstream 284949 30106649 ~ 30141117 (-) False XLOC_028844
TCONS_00055862 mRNA downstream 181 29820388 ~ 29821139 (-) True XLOC_028839
TCONS_00055861 mRNA downstream 52016 29758289 ~ 29769304 (-) True XLOC_028838
TCONS_00055860 mRNA downstream 67425 29753347 ~ 29753895 (-) True XLOC_028837
TCONS_00055859 mRNA downstream 145240 29653496 ~ 29676080 (-) False XLOC_028835
TCONS_00055853 mRNA downstream 770737 29032643 ~ 29050583 (-) False XLOC_028831
TCONS_00055863 mRNA upstream 6968 29828668 ~ 29833326 (-) True XLOC_028841
TCONS_00055864 mRNA upstream 223793 30045493 ~ 30057608 (-) False XLOC_028843
TCONS_00055865 mRNA upstream 227013 30048713 ~ 30055196 (-) True XLOC_028843
TCONS_00055868 mRNA upstream 324284 30145984 ~ 30153910 (-) False XLOC_028845
TCONS_00055869 mRNA upstream 324284 30145984 ~ 30154626 (-) False XLOC_028845
TCONS_00055851 other downstream 965643 28829894 ~ 28855677 (-) False XLOC_028829
TCONS_00055850 other downstream 1279185 28542021 ~ 28542135 (-) True XLOC_028825
TCONS_00055849 other downstream 1388875 28432331 ~ 28432445 (-) True XLOC_028824
TCONS_00055832 other downstream 2680017 27141179 ~ 27141303 (-) True XLOC_028817
TCONS_00055829 other downstream 2722035 27088371 ~ 27099285 (-) True XLOC_028815
TCONS_00055888 other upstream 1133641 30955341 ~ 30955504 (-) True XLOC_028861
TCONS_00055889 other upstream 1153216 30974916 ~ 30975079 (-) True XLOC_028862
TCONS_00055890 other upstream 1163656 30985356 ~ 30985519 (-) True XLOC_028863
TCONS_00055891 other upstream 1170181 30991881 ~ 30992044 (-) True XLOC_028864
TCONS_00055892 other upstream 1171486 30993186 ~ 30993349 (-) True XLOC_028865

Expression Profile

//