RNA id: TU2460556


Basic Information

Item Value
RNA id TU2460556
length 518
RNA type TUCP
GC content 0.50
exon number 3
gene id LOC100135966
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 11241994 ~ 11244060 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAGGTATAAATACCACAGCCCTTTGTTTGCGAGAACAGAGTCGTTTCCTGAAGACAGAAGCAGAAGCTAGAATATTCAAGAACGCCGGTGGCTCATTTATTCTTGTCAAGATGCAGATCTTTGTGAAGACACTTACCGGCAAGACCATCACCCTGGAGGTCGAGCCCAGTGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGCGCTTGATCTTCGCTGGTAAGCAGCTGGAAGATGGTCGCACGCTCTCTGACTACAACATCCAGAAGGAGTCCACTCTTCACCTGGTCCTGCGTCTCCGTGGTGGCAACTAAGCAGCTTCTCCTCTGCTCTTAACGATGTCTCATCTTAACCCCCATCTTAATCTCAATCCCACCCATTGACCGCTTCTTCCCTCTAACCCCACCCTCTGACTTTCCCCTCTCCCCTAACCTCACATCCCAGCTCTTCATTCCTTTAAATTTCAATAAAGTTCAAGCATTCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2460571 lncRNA downstream 1447 11240212 ~ 11240547 (-) True G2151846
TU2460570 lncRNA downstream 1886 11239773 ~ 11240108 (-) True G2151845
TU2460512 lncRNA downstream 108298 11132594 ~ 11133696 (-) True G2151799
TU2460515 lncRNA downstream 109500 11132140 ~ 11132494 (-) True G2151802
TU2460552 lncRNA downstream 114191 11127602 ~ 11127803 (-) True G2151839
TU2460626 lncRNA upstream 1176 11245236 ~ 11252463 (-) True G2151894
TU2460661 lncRNA upstream 73539 11317599 ~ 11326837 (-) True LOC110509360
TU2460645 lncRNA upstream 109174 11353234 ~ 11354570 (-) True LOC110512753
TU2460682 lncRNA upstream 112700 11356760 ~ 11357715 (-) True G2151944
TU2460691 lncRNA upstream 181827 11425887 ~ 11427513 (-) True G2151952
NM_001124691.1 mRNA downstream 5657 11232998 ~ 11236337 (-) True LOC100136736
XM_021590611.2 mRNA downstream 23038 11215478 ~ 11218956 (-) True LOC110509613
XR_005040443.1 mRNA downstream 48495 11190570 ~ 11193499 (-) True LOC118945308
XM_036968104.1 mRNA downstream 82992 11139422 ~ 11159002 (-) True LOC110509316
XM_021590605.2 mRNA downstream 188165 11046317 ~ 11053829 (-) True ddx56
XM_036967953.1 mRNA upstream 6209 11250269 ~ 11300824 (-) False LOC110509318
XM_036967954.1 mRNA upstream 6209 11250269 ~ 11300824 (-) True LOC110509318
LOC110509360 mRNA upstream 71583 11315643 ~ 11347641 (-) False LOC110509360
XM_036968172.1 mRNA upstream 85889 11329949 ~ 11333529 (-) True LOC110509319
XR_005040356.1 mRNA upstream 107134 11351194 ~ 11445936 (-) False LOC110512753
TU2460472 other downstream 248115 10993166 ~ 10993879 (-) True G2151771
TU2460429 other downstream 272693 10951249 ~ 10969301 (-) True ttll11
TU2459830 other downstream 442676 10718021 ~ 10799318 (-) True G2151189
TU2458082 other downstream 1804457 9365212 ~ 9437537 (-) True ttc33
TU2456440 other downstream 3073963 8130783 ~ 8168031 (-) False LOC110509586
TU2460707 other upstream 212558 11456618 ~ 11525152 (-) True LOC110509625
TU2460859 other upstream 478012 11722072 ~ 11722479 (-) True G2152107
TU2461170 other upstream 697402 11941462 ~ 11944153 (-) False atg10
TU2461172 other upstream 697402 11941462 ~ 11944153 (-) True atg10
TU2462005 other upstream 1405116 12649176 ~ 12649495 (-) True G2153174

Expression Profile