RNA id: LOC110509360


Basic Information

Item Value
RNA id LOC110509360
length 5107
RNA type mRNA
GC content 0.53
exon number 23
gene id LOC110509360
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 11315643 ~ 11347641 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGCCCTGCGAAACGAGCAGTTGGTCAACGGAGAGCGAGGCCGCCGCTCCAACCAATCAGATCTCAAGACCTCCACGCCCCGGCGAGTCCTGTCCCCCAAACTCAAGAGCCCACCCCTGGGGGCGACAGCCAAACAGGAAttgAATCCGTCTGAGTTGAACCTGTGTGAGGACTTGAGGAACCTGAGGGTGGAGCGCTCCACACTTTAACCAGTCGAGCTAAAGCCAGCATGCCCCTCACACACGCTGGACCCAACCTGCTCAACTTCTGGCTGCCGCTGAACCAACACGGaaagACCCCTCATTCCCGTCGTGGGGACAGTGTGTGGGACGCCCCCCCTGCCCTGGCCGCTCTAGTCAGGCGTGTGTATGCCTCCAAGGTAGGCACGCGCAGGGACCAGAGTGTGTGCGCGGTGGGATGCAGTGGCACGGGCAAGACCACCTCCTGCCAAGCTttcacccacacacactcctcaAACAGGCTGGCACCGTCGGAGACAGCATCAGTGtggAGCGTACCCAGGCAGTGTTTACGATCCTAAGGTCTTTTGGGTGTGTGAGCTCTCAGCACAGAGACGCCTCATCCCGCTTCGCTGAGAGAGTTCCAGTAGACTTTGAAGCTCCAGAGACCagtcctgctgtggtggtgtatGCCATAGCCCGCTCTACAggtgcgAGGGGCGGAGGGAGACCCCAGAGGACTGCTGTGGGTTCTGGATGAGGAGATGGTGACTCCGGGATCGACAGAAAACACTGTCCTGGAGAGAGTCTGCCAGTACTACAGCTCCACTGTGCGTCAGTGTGAGCAGCCCCTGCAGTGGGAGGTGAGCCACCTGATGGGTTCTGACCCGGTCAGATATGACCTGACTGGATGGTTCAACCTGGTTCGGAGCAACCCATCTGCTCTCAATGCCATCTCGCTGCTGCAGAAGTCCTCTGTttgGGTAGTGAAGACGCTGTTCGGCCCCCGTGCCTCTGTGCCCCGCCCCCGTGTCGAGGTTTGGGAGGGGGCAGCCAGGGCTCGCTACAGAGGAGTGGCACTGTCAGAAAGACCTTCAGTGGAGAATTGGGCGCCATACGCAGGCACACCCGCTGTAAATCAGTCAAACTACCGGCCGATGCTCTGTTGAATCTGATTGGTCGAGCCAGGTCAGTGTTCATGCAGTGTGTGTTTGCTAAGACAGACAGCGGTAGCACTCTGCACACATCCTCCCAGCCCTGCAGCTCTACCACACAGGTTATTCGGAACACGTGACTCTGAGTGACTTCAGGTGTCGTTTCCAGGCTCTGTCTCCTCTGGTTATGAAACGGTATGGTTCAGTCTTCATCACCCCGGATGAGAGGAAGGAAAGTGGAGGAGCTGCTGGTAGATCTGGATCTGGAGAGAgtatcagggagggagggagcttcTGTTCTGACAGTACTGAGCTCCTTAGAGTCAGTCTCTGACACAGTGTTTCTGAAGATTAGTACAGTAGGTAGGATGCCggtatctctgtctgtccccatACAGGTGCAGCAGATTGCTGTGAGGTGTTTCCAGAGTAACATCCGTACTCTGAGATGCGTGGCCAAGTGGATCTGGTGGAAACTGCTGTGTAGAGTACGCCCCCTACTGGATGTTAACATGGACGACCAGAGACTCAGAGCCAGGGAGGATGAGATCATGGCTCTGAGACGCCGGCTGAAGAAgtctgagagggagaggaacgaGCTGAGCCAGACCACTGACATCCCTGAGACCAAGGTGACGGCGGTGTCGTCGGAACTAAGTGGCGAGCGTTTCCGCGGTGACGCTgctCATCTGGACCAGTGTAAGGTCACCAGGGGGGCGCTGGAGAAACAGttggaggaggagaaacagaaaGTGGGCCACAGGGACTTTGAGGTGGAGAAGAGACTGGGGAGAGATCTGAAGAGAACCCATGCTCTGCTGTTGGACGCTCAGCTACTACCGTCTACCATAGACAACCCTGGACACAACCAGGCCCCCGGCAGCAAGGAACACATAGAGCGCCTGCACTGccagctggccgtgaccgTGGGACCCAtgagttggGGAAGAGTGAAGCGAGGAGTGCTGGAGTATTTTCAGAAGACTCTGTCCATGGAACTGGAGAATGCTCAGAACTAGAGAACATCTGCAAACACAAGCATCtgGTGGATGAGCAGGTAGTCCAGCTCCAACATGAGAAGTCAGATCTGTTGAAGAGACTAGAGGAGAACCAGGGGGACCTTGATGAACTCCTGAACAAACACAAAGCCCTCATCACTCAGtcctccggTGGTATCTCTCAGGTCAGAGAGTTGCAGGCTGAACTGGAGGAGGTCAataaacagagacacacagtacAGGAAGAGcTTGCAACGAGTGTGACCAGGGTGCAGCTCCTGGAGTCGCCCACGGTGGGCCGTAGTGTCGTCAGTAAGCAGGAGGCCAAGGTGTGTGACCTGCAGAACAAGCTGGAGTTCCAGAGAGGACAGGTCAAGAGGTTTGAGgtgctgCATCTGAGGGAGAGTGTTGTGTGCCTTGGAGAGGAGCTGGAACAGAGTGCTGAGACgggggccagggagagagagaacaggcaacGCCTCCACGAGATGGAAGACCTGGCTCAGAGAGAACAGGACAGTAGCCGCAGACGCATAGagctggAGATGCCAATGACGGAGCTGAGTACAGTCCGACAGACATTACGACATCCATCCGCCGTATCGTTGATCCGCAGGCCTCCCTGGAGGAAGTGGAGTCTAGTGATGAGTGACTTGTATCTTACTGTGTTGGATGGTGTGAGAGTGGTATCGGGGGAAGGGTTAAAGCAATGGTGTGTGTGGGAAGAATGACTCTGTTAGGAGTCAAGGACGGGTACAGGTGTGTTCACAAGGAAGTGACGTTATCACTGATATTAccactgacctttgacccctctCCCCAAGTGTTGCGACGGCTGTGGAATCCTTGACCAGAAAGAGAGACCTGTAAGAACCCTGGGtccctgtgtgtgtttttagacCAGTCTGTTCTGACTTGATCCCAGgactgttgatgatgtggacagaCCGAGCATGTTGCAATGCTGGTTGTGAGTGGCTAGATGTCTGAGTTGTAGTCTGACTGTTACTGTCTACGGCGGCACCATCTccctgttggttttgtcttgtggTCTGTGGGTGGACCGGTTCGAGGACCACAGGGCTGGAGCAAAGAAACGTTTAAGAAGTCACAATGAGCTCGTCTCTGTTCTAAGGTGTGTGCATGAGAGTTCACCTGCTTTGATATTCTTGTCTTCCATGATGCATGGGAGTTACAATACAGAAGCCagttctgctctctccctcctgtcccttTCTCTATCGTCATTTTACCGTTCCCCCTTTCAATCCTGCCGGCTCTGTCGCTTCTCTGTCCAACTTCTGTTCTTTGACCTATTTTAATTCTCGCTCCCACCTgttcctcttctttcctctctctgtgtcagacAGGTGAcatactggtactgtgtattaACTGTGTGTGAATGTCTCCTGCTgtgagaccagaggtggcagagaggatacagagacaGGAAATGTCCTGTGGCTGTCCCGGACTTAGAAGTCTTGCATCACTGGCTGTGCAGTGTCGCGTGTCTTCTCTCTCTTGGTAGTGTGTGATCTCTGCCTGCCAGTAACActgtgtaccgtgtgtgtgtgtttctctcttcctcagcAACAGTGTGTCTAGTGTTGGTTCTCAATCTCTGGACACGGAGGATGTTGGCGAGGTTATCTGTTATTGCCTAGGCATTCCCCAGGGGGGGGGCTCTCCCTGTGGCAGCAGTACAATCAGCAAccagttggtcacagacaccATGAGCACTTACAGCTTCCGATGAGGGTTCAGAACCAGGGGGTGCGGTTGGTAATGGGGATAGTTCAGGTCTCGGTCGGGCCTCCTCCCTCTCCGAGCTGTTAGAGGGTCTTCGTaagtggctgggggggggggggggggtggcagtaCTACTACTCTCCCAGACTACTGGGGCCTCAACCCTCTCCTTGGGCCCAGAAGACCTTCATCAGGAGCCTTGCAGCATCCTCAAACCTCCTTCCCCACTGCTACCCCGAGCCACCAGTCTAGGCAAAATAAGCGAACCCCAGGCTTCATCAGCAGCCTCCAGGGACTCGAGCCAAACTCGACAGCTCCTCCAACTCTTCCCCTCCGAAGAACCAAACCAATGAGACGCAGGCTGCTGGGTAGAGTTGTCAGCGAGGGCGGTGGAGAGGGTTCTCTGGGGTCGGAACCCATGGTGTTCCAGAACCACCGTCTCCTAGGTGACAGTAACTGTGACAACGCAGCCTCTGACATTCTGCCGGTCATCTGACAGGCCCAGTCCACCAGCAGCCTGGCCAATTCAGTCGGAGGGCACTCAGCTCAGGGTTTGGGAGGAGGGGTGCAGGGAGAGACTAAGAGGAAAGTAGAGAGGTTGAGGTGTAGCATGGAAATATACACATGTAAGGTAGTCAATACAAGGTTTTATGTATTCCTCCCTCTCCCTAGTCTGTGTGTGAGGCAGGATAAACTGAAGCCACTCAGAGATCCCTATGCAAGTTGCAAGGAGTCACACTCAAGCCAAAGAAGATCGACAGTGCATTTGGAacgtattcagacctcttgacttgttccatattttgttacgttacagccttattctgaagtggattcaattgttttcctcatcaaatCGACACAATGCAGAAAGGTTTTTAAACATTTGTTCAAATTTATAAAAGTTAAAcaactttgctatgagacttgaaattgagctcaggtgcatcccgtttccattcaTCTTTGAgccgtttctacaacttgattggaatgcACACAGTTGgcagtggatgtcagagcaaaaaaaacaagccatgaggtcgaaggaattgtccgtagagctccgagacaggattgtgtcgaggcacagatctgggaaagggtacttAATTTCTGCAGCTTTGGAGGTTCCCAAGACCAAAGTGGCCGCCGTCATTCTTAAAATGGAACAAtattggaaccaacaagactcttcctagagctggccgcccagccaaactgagaaaatgggggaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2460626 lncRNA downstream 63180 11245236 ~ 11252463 (-) True G2151894
TU2460571 lncRNA downstream 75096 11240212 ~ 11240547 (-) True G2151846
TU2460570 lncRNA downstream 75535 11239773 ~ 11240108 (-) True G2151845
TU2460512 lncRNA downstream 181947 11132594 ~ 11133696 (-) True G2151799
TU2460515 lncRNA downstream 183149 11132140 ~ 11132494 (-) True G2151802
TU2460645 lncRNA upstream 5593 11353234 ~ 11354570 (-) True LOC110512753
TU2460682 lncRNA upstream 9119 11356760 ~ 11357715 (-) True G2151944
TU2460691 lncRNA upstream 78246 11425887 ~ 11427513 (-) True G2151952
TU2460692 lncRNA upstream 78534 11426175 ~ 11428409 (-) True G2151953
TU2460693 lncRNA upstream 78893 11426534 ~ 11427394 (-) True G2151954
XM_036967953.1 mRNA downstream 14819 11250269 ~ 11300824 (-) False LOC110509318
XM_036967954.1 mRNA downstream 14819 11250269 ~ 11300824 (-) True LOC110509318
NM_001124306.1 mRNA downstream 71638 11241994 ~ 11244005 (-) False LOC100135966
NM_001124691.1 mRNA downstream 79306 11232998 ~ 11236337 (-) True LOC100136736
XM_021590611.2 mRNA downstream 96687 11215478 ~ 11218956 (-) True LOC110509613
XR_005040356.1 mRNA upstream 3553 11351194 ~ 11445936 (-) False LOC110512753
XR_005040357.1 mRNA upstream 5662 11353303 ~ 11445936 (-) False LOC110512753
XR_005040358.1 mRNA upstream 5662 11353303 ~ 11445936 (-) False LOC110512753
XM_036967334.1 mRNA upstream 5662 11353303 ~ 11446933 (-) False LOC110512753
XM_036967333.1 mRNA upstream 5662 11353303 ~ 11448019 (-) False LOC110512753
TU2460556 other downstream 71583 11241994 ~ 11244060 (-) True LOC100135966
TU2460472 other downstream 321764 10993166 ~ 10993879 (-) True G2151771
TU2460429 other downstream 346342 10951249 ~ 10969301 (-) True ttll11
TU2459830 other downstream 516325 10718021 ~ 10799318 (-) True G2151189
TU2458082 other downstream 1878106 9365212 ~ 9437537 (-) True ttc33
TU2460707 other upstream 108977 11456618 ~ 11525152 (-) True LOC110509625
TU2460859 other upstream 374431 11722072 ~ 11722479 (-) True G2152107
TU2461170 other upstream 593821 11941462 ~ 11944153 (-) False atg10
TU2461172 other upstream 593821 11941462 ~ 11944153 (-) True atg10
TU2462005 other upstream 1301535 12649176 ~ 12649495 (-) True G2153174

Expression Profile