RNA id: XM_021590622.2


Basic Information

Item Value
RNA id XM_021590622.2
length 1762
RNA type mRNA
GC content 0.47
exon number 1
gene id LOC110509625
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 11456618 ~ 11525214 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGCGTGCGAATAACGGTCCCATAAATGACAAAGGCTGCACCCCCTTCTGGCACAGAGTGGATTCAGACCTGCCAGAGAGCCTATATACCTTACCTTATACCTCCTAGCCTCTCTTTGATCATCTATTACAAGCCTACATTTCTAGAGCGAATAAGAGAAAGAGATTCTTCTGATACTCGAGTGGATATTAAATGACATTTGtgtccactctcctctctctgttttaaAGAAGAAAAAGGCTCACCATGCTCTCTGCGTGTCTGGAGGTCCTTGGGATGGGGTTGTGCCTACTGGGCTCGCTCCTGGTCATGGTCGCGTGCGGGCTGCCCATGTGGAAGGTGACGGCGTTCATCGATATGAATATTGTGGTTGCGCAGACCATCTGGGACGGGCTCTGGATGTCGTGCGTGGTGCAGAGCACGGGTCAGATGCAGTGCAAAATGCACGACTCGATGCTTGCGCTCAGCCAGGACCTGCAGACGGCACGCGCCCTCACGGTGATATCGGCGGTGCTGGGGGTGGCGGGGCTGGTGGTGACCATCGCTGGAGCACAGTGCACCAACTGCATCAAGACCGAATCGGTGAAAGCCAAAGTGGTGAACGCAGGTGGGGTGGTCTACATCATCAGCGGTCTATTGGTGCTGGTTCCCCTCTGTTGGATGGCCAATAACATCATAGTAGACTTCTACAACCCAGATGTGTCCTCGTCCAAGAAGAGGGAGATAGGAGCGGCCATCTACATTGGCTGGGCGGCCACAGCCCTGCTCCTTCTGGGGGGAACCCTGCTGTGCTGCTCCTGTCCCCAGGGAGCCAAGAGCGCCTACCCCATCAAATATGCCCCCACCAAGACCATCTCGGCCAATGGAGACTTCGACAAGAAACATTATGtgtaggtgaggagaggagagttttaCTCACATCAAAACTTGGCACAGGACCTGGACGGACAAGTTGTCTACTTAGCCTACTGTTTGATGCCCATTGCGTATGTTATCTTTATTGTGTTTCTCTAGAACGGAAGCTTCGATAagggacattatgtgtaggcgaGATGATATCAGGATCCTTTTTTCCCCTCCTTTGCTTTGATTGGCATGGCGACTtcaccaaaatgtattttttctgtGTTGTAGGCTACAACTTTGTTTAGGGGTCTGGCCATGGGTTCATGGGTCTGatgaacagaaaaggaaaaattCAATTTTTTGCCAAAGGAATGGAACCCTATACACACCGAGATCATAGCTCAAGACTGACCAAGAAGTTGAAACACTTGTTGTGTAGTCTATCTATTGCGTAACATTTTTAAGACTTAAATCTTGTATTTGCATATGATTATTTTACATCAGGAATTATATAGGCTTTCTGTAAAAATGTTCATGTTGTTATCGGTTGACACTAGTCTATTGTCTCGCCAGAGTCTGCTGTCACGGTCTGTGCGCTCTGTGAATAAAGCTCATTGTTCTCCACTGGCTTTACTGTGTCTGGTTGGAAGTTTTAAATAACCACATAATGTACATCTTTGCAGAGACTGGTAATAGTTAACATGTTTAGGTTCCCACACTGGACTCCTCCTTTGTAACACAGTGAATGCTACTCAGACAAATGTTCACTCATACCATGATCAAAGGAGCTTATTTGCGTTTGAATGCTGTTCTATTTTACTGCATGGCTGAGTGTGTATCTATCTTTTGTCCTAGCCCTCTTTAAAGTACTGGGCAATTGTTGTTCTTTAATAAAAAAGGAAATCCCAATTCACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2460702 lncRNA downstream 70229 11453023 ~ 11453224 (-) True G2151963
TU2460694 lncRNA downstream 90545 11431821 ~ 11432908 (-) True G2151955
TU2460692 lncRNA downstream 95044 11426175 ~ 11428409 (-) True G2151953
TU2460691 lncRNA downstream 95940 11425887 ~ 11427513 (-) True G2151952
TU2460800 lncRNA upstream 98378 11623592 ~ 11628058 (-) False G2152054
TU2460801 lncRNA upstream 98378 11623592 ~ 11628058 (-) True G2152054
TU2460804 lncRNA upstream 103307 11628521 ~ 11629395 (-) True G2152055
TU2460753 lncRNA upstream 107859 11633073 ~ 11637738 (-) True G2152011
TU2460840 lncRNA upstream 171112 11696326 ~ 11696563 (-) True G2152088
XM_036968069.1 mRNA downstream 13511 11503158 ~ 11509942 (-) True LOC118945324
XM_021590620.2 mRNA downstream 55396 11464844 ~ 11468057 (-) True LOC110509622
XM_036967339.1 mRNA downstream 71442 11448974 ~ 11452011 (-) True LOC110509320
XM_036967333.1 mRNA downstream 75434 11353303 ~ 11448019 (-) False LOC110512753
XM_036967334.1 mRNA downstream 76520 11353303 ~ 11446933 (-) False LOC110512753
XM_021590624.2 mRNA upstream 118819 11644033 ~ 11655110 (-) True LOC110509627
XM_036967201.1 mRNA upstream 328115 11853329 ~ 11884994 (-) False vcanb
XM_036967200.1 mRNA upstream 328115 11853329 ~ 11884996 (-) True vcanb
XM_036967303.1 mRNA upstream 360477 11885691 ~ 11915884 (-) True xrcc4
XM_036968101.1 mRNA upstream 415416 11940630 ~ 11944005 (-) False atg10
TU2460556 other downstream 279393 11241994 ~ 11244060 (-) True LOC100135966
TU2460472 other downstream 529574 10993166 ~ 10993879 (-) True G2151771
TU2460429 other downstream 554152 10951249 ~ 10969301 (-) True ttll11
TU2459830 other downstream 724135 10718021 ~ 10799318 (-) True G2151189
TU2458082 other downstream 2085916 9365212 ~ 9437537 (-) True ttc33
TU2460859 other upstream 196858 11722072 ~ 11722479 (-) True G2152107
TU2461170 other upstream 416248 11941462 ~ 11944153 (-) False atg10
TU2461172 other upstream 416248 11941462 ~ 11944153 (-) True atg10
TU2462005 other upstream 1123962 12649176 ~ 12649495 (-) True G2153174
TU2462547 other upstream 1562239 13087453 ~ 13091356 (-) True G2153683

Expression Profile