RNA id: TCONS_00005286


Basic Information

Item Value
RNA id TCONS_00005286
length 115
RNA type rRNA
GC content 0.50
exon number 1
gene id XLOC_002854
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 30531143 ~ 30531257 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTAGACATCGCCATATCACCCTGAAGCCCAAGGTTACTCACTGCAGCTAAGCatggctgagcctggtcagtacctagatgggagaccacatgagaaaactaggttgctgttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000187857

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006075 lncRNA downstream 1040056 29266270 ~ 29491087 (-) True XLOC_002843
TCONS_00005269 lncRNA downstream 1393139 29128202 ~ 29138004 (-) True XLOC_002841
TCONS_00006074 lncRNA downstream 2066117 28460213 ~ 28465026 (-) True XLOC_002834
TCONS_00005770 lncRNA downstream 2112964 28417651 ~ 28418179 (-) True XLOC_002830
TCONS_00006073 lncRNA downstream 2145574 28382085 ~ 28385569 (-) True XLOC_002828
TCONS_00005294 lncRNA upstream 731595 31262852 ~ 31294777 (-) False XLOC_002858
TCONS_00006076 lncRNA upstream 731595 31262852 ~ 31295006 (-) True XLOC_002858
TCONS_00006077 lncRNA upstream 1546554 32077811 ~ 32084121 (-) False XLOC_002862
TCONS_00006078 lncRNA upstream 1546554 32077811 ~ 32084624 (-) True XLOC_002862
TCONS_00006079 lncRNA upstream 1685156 32216413 ~ 32250771 (-) False XLOC_002863
TCONS_00005284 mRNA downstream 627978 29896275 ~ 29903165 (-) False XLOC_002853
TCONS_00005285 mRNA downstream 630597 29896383 ~ 29900546 (-) True XLOC_002853
TCONS_00005283 mRNA downstream 638657 29890535 ~ 29892486 (-) True XLOC_002852
TCONS_00005280 mRNA downstream 699199 29820172 ~ 29831944 (-) False XLOC_002851
TCONS_00005282 mRNA downstream 699199 29829513 ~ 29831944 (-) True XLOC_002851
TCONS_00005287 mRNA upstream 86569 30617826 ~ 30785501 (-) True XLOC_002855
TCONS_00005288 mRNA upstream 465981 30997238 ~ 31016806 (-) False XLOC_002856
TCONS_00005289 mRNA upstream 468494 30999751 ~ 31015535 (-) True XLOC_002856
TCONS_00005290 mRNA upstream 488350 31019607 ~ 31104983 (-) False XLOC_002857
TCONS_00005291 mRNA upstream 489302 31020559 ~ 31220558 (-) False XLOC_002857
TCONS_00005276 other downstream 792035 29736186 ~ 29739108 (-) True XLOC_002847
TCONS_00005273 other downstream 822961 29708068 ~ 29708182 (-) True XLOC_002845
TCONS_00005263 other downstream 1607510 28923517 ~ 28923633 (-) True XLOC_002838
TCONS_00005262 other downstream 1608892 28922135 ~ 28922251 (-) True XLOC_002837
TCONS_00005252 other downstream 2075972 28454500 ~ 28455171 (-) True XLOC_002833
TCONS_00005293 other upstream 490099 31021356 ~ 31104754 (-) True XLOC_002857
TCONS_00005308 other upstream 2011279 32542536 ~ 32610769 (-) False XLOC_002866
TCONS_00005309 other upstream 2036367 32567624 ~ 32610694 (-) True XLOC_002866
TCONS_00005329 other upstream 2845561 33376818 ~ 33376941 (-) True XLOC_002883
TCONS_00005330 other upstream 2845744 33377001 ~ 33377086 (-) True XLOC_002884