RNA id: XM_036967670.1


Basic Information

Item Value
RNA id XM_036967670.1
length 4265
RNA type mRNA
GC content 0.48
exon number 21
gene id LOC110509626
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 11586532 ~ 11634525 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCCGCGTAAAGCAATTAGGCTACTATCACTCACTCCATTGGTCTACCCTACAGAATTCATCGAAGCAACGTTGCGGTGTCTTCAAAGGAGAAACTGCGTAATGCGCAATAGCtgctggtctccagtgcgccttgtCAGTCCATCATGCTGTGACACTTATCGTTTCGAAAGCAGCAGcgcaccacacagagagagaacgagcaggagagaatggagagaagtgAAGAGAACGACGATGAAGCCTCCTCGTCCTCGTCCCAGCAAAACACAATGTGGAAACAATTTCAAGCGAGAGCCAAACCCATCCTTAGCCCCAAACTCAGCGCCAGAAACCCAGATGAGAAAAAGGAGAAGGGATCATTGTGGATGTTTCGGAAGAAGAAAAAACACCCTGTTTTGGATCGTGTGATCTCCTCCTCACAGCCCGACCTATTCTCTGAACCGGTGGGTTTGGACTTGCAGGAGTCGCCCCTCTGCGGCAAAGTGGACCCGAGCACCAGCCACAGCTCCAGACAGGCGGGCGAAGAGCCGATGCAGCCCGACACACAGAGAGTCGTTGGCGGCTCGGGAATCCCGAAGCCCACGCTAGTACAGCTGGTGCAATCCCACCACAAGAGCTCCTCGCTGGGGTCCTCGTGCCTGGAGAGGCTGGTTGCGGACCCTTCAGCGAGTGGTAGTGACAGCGATGTTGGAGAGAAGGAGGCACAGCTGGATAAAGCTGACCTGCAGGTTATGGGTGCCACTGGTGCCTCGGGGGTTAACTCGGACAAAGCTCTGCCCAGCTCAGAGATGTACCAGCTGGACATAGTGCTGAAGAGAGGACACAACCTGGCCATACGGGACAGAGGAGgtaccAGTGATCCATATGTGAAGTTTAAGCTGTGCGGGAAGGAGGTGTTTCGCAGTAAGACCATCCACAAGAACCTTAACCCTGTCTGGGACGAGGGGACTAAACTACTGGTTGACAGTCTGCAGGAACCTCTCTATGTCAAGGTGTTTGACTATGACTTCGGCCTTCAGGATGACTTCATGGGTTCAGCTTACCTCTACCTGGAGTCCCTGGAGCAACAGCGGGCAATACCAGTTAATCTAACACTGCAGGACCCTCACTACCCTGATGTAGACCTGGGAACACTGGAGCTGACCGTCACCTTAAGGCCTAAAGACGGCTCCATAGAGGAGCCGCACAGGGATGCCACTACCATGCTGCTCAAACGGACCTGGAGGCGATCCAGTAAGCAGTCCGTGCGTCTGGCAGAGCTGCACCGTAAGCACCAGCTGTGGAGAGGCATCGTCAGCATCTCTCTGATCGAAGGTCGTGACCTTTGTCCCATGGACCCCAATGGCCTCAGTGACCCCTATGCGAAGTTCAGACTGGGAAACCAGAAGTACAGGAGCAAGACCATGCCTAAGACGCTGTGTCCCCAGTGGAGAGAGCAGTTTGATCTGCACCTGtatgaagagacaggaggagtgcTGGAAATTGCAGTCTGGGACAAAGATACAGGACGCAGGGATGACTTCATAGGACGCTGTACATTAGACTTGTCCACCCTTGCTAAGGAACACACCCATCGGTTAGAGCTGGCGTTGGAGGAGTCCCGGGGCTCTGTGGTGCTGCTGCTCACTCTGACAGCCTCTTCACACGTCTCCATCGCCGACCTGTCACTCACCCCGCTCGACGACCCCATCGAACGCAGGGAGATCATGGGCCAATATggcATGTTCCGGCCCCTGTCTAACCTGAAAGATGTGGGGATAGTTCAGGTCAAGGTGATGAGAGCTGAGGGCCTCATGGCTGCCGATGTCacagGTAAGAGTGATCCTTTCTGTGTTTTGGAGCTGAATAACGACcggttacaaacacacaccatctACAAGAACCTCAACCCGGAATGGAACAAAGTCTTCACCTTtAATGTGAAGGACATCCACTCTGTGTTGGAGGTGACAGTGTTTGATGAAGACCGAGACAGGAGCGCTGACTTCTTGGGCAAAGTGGCCATCCCACTGTtacatATCCAGAATGGAGAACAGAAGGGTTATGTATTGAAGAATAAGGAGATGACCGGACCAACTAAAGGACTCATCTACCTAGAGTCTGACGTCATCTATAGCACTGTGAAGGCAGGCTTGAGGACGATAGTTCCACCAGAGCAGAAGTACATTGAGGAAGAACCCAAAGTGTCTAAACATTTGCTCCAGCAGAACTTTAACCGAGTGAAGAGGTGCATCTTGTTCGCGATAAACATTGGAACCTTCATTAACAGCTGCTTTGAGTGGGAGTCACCTCAGAGGAGCATCAGTGCCTTCCTgttcttTGTGGTAGTAGTGTGGAACTTTGAGCTCTATATGGTGCCTGgagctctgctgctgctgttgacgTGGAATTACTTCATCACTGCAGGCAGGGAGTCGGGAGACACGGCAGGGGAAGCCACGTTCgagtgggaggaagaggaagaggagaaagatgaCAAGGATTCGGAGCGTAAGGGCTTCATGGATAAGCTGTATGCCCTCCaggatgtgtgtgtcagtgtacagAGTGCCTTGGATGACGTGGCCTCCTATGGAGAGAGGATAAAGAAtacattTAACTGGACAGTGCCTTTCCTGAGTTGGCTGGCCATATCTGTTCTGTGTGTGGCTACAGTcctcctctacctcatccctcTGCGATACCTTGTGCTCGCCTGGGGTGTGAATAAGTTTACTAAGAAGCTCAGGAATCCATACCTGATCGAAAACAATGAGGTGCTAGACTTCCTCTCTAGAGTCCCCTCAGACGTACAAGTGATGCAGTATCGGGAGCTGAAGTTCGATCCAGGACAGAGCCCCAGCAAACGAAAGAAGACCAACCCtggctagacacacacacacacacacacacacacacacacacacacacacacacacacactggactctgtcTCTGAGGGATTTTCAACTCCCCCATACTTTGTAAATAGGGTACGCAACTGTAAACATTGTAAAACAAATAGTATTGAATTTTTTTATATGATGAATATTTCATCATTACGATTAAGACTAGTGCTAGTTTTATTTTGTATGTTTTAGTTATTGTGGAAGTCACAGCACAAAGAGAAGTATGTTTTTTTTACTCCTTTTCTTTGTTTGGTCACAATATCATTTTATAAAACGGGTCCAAACACTTCTGAATTTTTAAAATGGAAAGACTCCCTTCTGGAGACGTGTGCTTTCCTCCGACTAGATACCTGGACACCTGTACAAGATCAGCACAGGGACACACTAGCCTCCAGGACAATGTTGCCAGTtataaaaacattgtttttaataaagATTTCTACAGagatatatacaaatatatgtatgtgtataacGAAGAGTATGTATTTATATCAAAGAGCATATACgtgtgtactgtgtatgtttgtcaaatcaaatcaaaaaaaatattgatcacatacacatatttagcagatgtttttgcgaGTATCGAAATGCTTGTATAACAGAAAGAAATACTTAAAAGTTGCTATTGGCGCCATCTTGGCCCTAGTCTGAATTTCTGCAGGTTTGTTTTTAACGTACAGAGAACAGAGTCTTCTTGTAAAACTCTTCTGTTTCTTTGGTCCAGACACATTTTTTATCTGCCATTGAATACcccgaagaacatggctgacgttttacattctcccaaccaattgtgctattttgttatgtttttgtgctttttttgtaacttattttttaaacttattgtgtacatgttactgctaccgtctcttatgaccgaaaataacttctggacatcagaaaagcgattactcacctcagtctggaagaaactttttcctttaacgagtccgacgagaaggatatcctgctttcagtggaacaggcccagatcaaCGCCTTTTGCTTGAAAAAAAGACGCCGGAAAAGGGGCCGCAGATCGGGGATCCTTCTGAGAATCCGGAGGTGaacgagtaaactcccactgccttcCATTCTTCTCGCTAACGTGCAATCAATGGACAATAAAATTGGCGACCTACGAtaaagattatcctaccaacgggacattaaaaactgtaacatcttatgtttcacagagatgTGGCTGAACGAAGATACAGACAATATAGAGCTAgcaggattttccatgcaccgcagaacagagacgctacctaCCTCTGGTAAAAcgaggggtggggtgtgtgtctttttgtcaataacagctggtgcgcgatgtctaatattaaagaagaatattat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2460283 lncRNA upstream 118578 11464844 ~ 11467954 (+) True G2151603
TU2460253 lncRNA upstream 148714 11425872 ~ 11437818 (+) True G2151577
TU2460224 lncRNA upstream 154280 11359557 ~ 11432252 (+) False G2151555
TU2460242 lncRNA upstream 174131 11411930 ~ 11412401 (+) True G2151568
TU2460230 lncRNA upstream 187288 11359182 ~ 11399244 (+) True G2151557
TU2460422 lncRNA downstream 87440 11721965 ~ 11722354 (+) True G2151723
TU2460423 lncRNA downstream 88871 11723396 ~ 11723678 (+) True G2151724
TU2460424 lncRNA downstream 89383 11723908 ~ 11724149 (+) True G2151725
TU2460425 lncRNA downstream 89813 11724338 ~ 11724554 (+) True G2151726
TU2460427 lncRNA downstream 92280 11726805 ~ 11727076 (+) True G2151728
XM_036968143.1 mRNA upstream 15832 11560912 ~ 11570700 (+) True LOC118945334
XR_005040502.1 mRNA upstream 25724 11536271 ~ 11560808 (+) True LOC118945340
XR_005040501.1 mRNA upstream 27766 11536271 ~ 11558766 (+) False LOC118945340
XM_021590618.2 mRNA upstream 121950 11459925 ~ 11464582 (+) False LOC110509620
XM_021590627.2 mRNA downstream 50825 11685350 ~ 11693079 (+) False arrdc3b
XM_021590626.2 mRNA downstream 51090 11685615 ~ 11693079 (+) False arrdc3b
XM_021590628.2 mRNA downstream 52006 11686531 ~ 11693079 (+) True arrdc3b
XM_021590629.2 mRNA downstream 82159 11716684 ~ 11720313 (+) True cetn3
XM_036967245.1 mRNA downstream 111533 11746058 ~ 11772847 (+) False mef2ca
TU2460223 other upstream 220040 11360385 ~ 11366492 (+) True G2151555
TU2459342 other upstream 1124312 10461753 ~ 10462220 (+) True G2150729
TU2458634 other upstream 1277453 10302688 ~ 10309079 (+) True LOC110509604
TU2457713 other upstream 2212020 9374000 ~ 9374512 (+) True G2149183
TU2457227 other upstream 2554237 9028161 ~ 9032295 (+) True LOC118945282
TU2460909 other downstream 129699 11764224 ~ 11766351 (+) True G2152150
TU2461440 other downstream 666267 12300792 ~ 12307438 (+) True G2152639
TU2462149 other downstream 1125355 12759880 ~ 12760490 (+) True G2153316
TU2463200 other downstream 2033764 13668289 ~ 13669170 (+) True G2154294
TU2463318 other downstream 2138183 13772708 ~ 13774088 (+) False G2154391

Expression Profile