RNA id: TCONS_00055865


Basic Information

Item Value
RNA id TCONS_00055865
length 2989
RNA type mRNA
GC content 0.43
exon number 7
gene id XLOC_028843
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 30045493 ~ 30057608 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCAGGAGACAAAACTAACAGGACCCACAAGAGTTTTACAGGCAATCTCCTGTTGATCTTCCAGaatcttgagagtaAAATTATCAGCTTTTTAAAGAATGAACTGGCAAAGTTTAAGAAAATCTTAAACAAAGAATACAgtcaagattttttaaagaactttaatgagaacagaagcagtatcacagaagcagctcttgatctcacactcttcttcctgagagagatgaagcaagatcaagctgctgagACTCTCGAGGATGAGCTGTTCTTCATcaatcagcttaaatgtagcctgaagaagaaatatcaaagtgtgttggAGGGAAatgctcagcaaggagactccacacttctgaataacatctacacagatctctatatcactcagggtgtaagtaaacaggtcaacactgaacatgagatcagacagattgaagctgcttccagacgtcatcagtcactagagatgaagattgaatgcaaacatttgtttgaagcaccTGAACAAGACAAGCAGAttagaactgtcctgacaaaaggagttgctggcatagggaaatcagtctctgtgcaaaagtttgttctggattgggccgaaggaaaagaaaatcaagacataaacttcatatttcctcttccattcagagagatgaacttaaaggagaaagaaaaacaaagtttaaaagacctcataactcagtttttcatagagactaaaggactgaaccttacaagaagcacacggttcaaagtcctgttcatccttgatggattggatgaatgtcgtcttcctctgaactttgctggtaatgagacgtgtcgtgatgtatcttcagcagtctctttggatgttctcctgacgaacctcatcaagggaaatctgcttccttctgctctcatctggatcaccagcagaccagcagctgccagtaagattcctgctgactgtatcgaccggctgacagagatacaaggattcaatgatgcccaaaaggaggagtacttcagaaagagactcacagacccgaatcaggccagagaaatcattgatcacattaaacagtcaaatagtctctttattatgtgccacatcccaatcttctgctggatttcagccactgttttcCAGAATGTTTTGAAGGAGAACAGAAATACtgaactgaaacacagggctaatgttgaaacactgcaggaatctcccaagtgtctgacacagatgtacacacactttctccgttgtcagatccagcagagcaggcGAAAGTATGATAGAGAAAACACAccagatgtctcctgggatcaaaacctcatcctttcactggggaaactggccttccaacagctggaaagaaacaatgtgatcttctatgagagcgatctaaaagactgtggcattgacgtctataaggcctcggtgtactcaggcatgtgtactcAGATCTTTAAGAAGGAGACaggaatcattcttggtaccatgtactgctttcttcacttgagcattcaggagttcattgctgCACTTTATGAGCATCTAATTCTAGACATCAACAAGAAACCTTTTCCTATTTTTAAGttgaaaagcaaaaataaatgtctGATTGATTTGCTAAAGgctgcagtggacaaggctctggaaagtgagaatggacatctggacctttaccttcgcttccttctcggtctgtcactccagtccaatcgacaactcttacgaggcctgttgacacagcaggatgacagagacaagagcaaaaagaaaataattgcatacatcaagcagaaacttgaaggaaatctgtctccagagagatccatcaatctgttctactgcctgaatgaactgaacgaccaaactctgctgaaagagattcagtctcacctcagtagaggaagtctgtcatctgctgatctttcacctgcccagtggtctgctctggtctttgtgttgttgacctcagagaaggagctggaggagtttgagcttcagaaattccagagatcagacgagtgtctcattagactatcagcagtcatcaaaacctccaaaagagctcAGCTACAGTGCTGTAATCTTACTTTTCgttcttgtgagagtttgtcttcagctctacaatcctcaaccTGTGTTCTGAAAGAGCTGGACCTGAGtgacaatgacctgcaggattcaggagtgaagcttctctctgatggactgaagagtccaaactgtaaactggagatcCTGCGattgtctggctgtatggtgacagtggaaggctgtggttttctgtcttctgctctgacttcaaacccctcacacctgagagagctggatctgagctacaaccATCCAGGAGATTCTGGAGTCAAGCTGCTCACTGAAAAACTGGAGGATTCAAACTACACACTGGATAAACTCAAtctggatcatggaggagaaaTGAGGATTACAGCTGGACCACACAAATatgcctGTTTCCTCACACTGGATCTAAACACGGCAAACACTGAACTTagtctgtctgaggagaacagagaggtcaAGTGTGTGTGGGAGAATCAGTCGTATCccgatcatccagacagatttgatcgTGTACTTCAGGTGTTGTGcgaagagagtgtgtgtgaacgctgttactgggagattgactggactGGAGATCatggtgtgtgtatatcagtgtcatataagagcatcagcagGAAGGGAGGCAATGAGTGTTTGTTTGGACGTAacgctcagtcctggagtttgatctgcTTTTCCACCAGCTTCTCATTCATACACAATAACATAAAGACTAATCTCTCAGTAAAGCCGCTCAGCagtagaataggagtgtttgtggatcacagtgcaggaactctcattttctacaacatctatagaaacacaatgagcctcatccactcagtccagaccacattcactgagccgctctatcCTGGGTTTTGGGTTTATTCTGGATCATCTGTGAAACTGTGCTGAAGTCTACAAGA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081103-31 Predicted to be involved in intracellular signal transduction.

Ensembl:

ensembl_id ENSDART00000139539

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058236 lncRNA downstream 81579 29965278 ~ 29967134 (-) True XLOC_028842
TCONS_00058235 lncRNA downstream 81673 29965278 ~ 29967040 (-) False XLOC_028842
TCONS_00058234 lncRNA downstream 227013 29821320 ~ 29821700 (-) True XLOC_028840
TCONS_00058233 lncRNA downstream 341494 29705193 ~ 29707219 (-) True XLOC_028836
TCONS_00058232 lncRNA downstream 364808 29682463 ~ 29683905 (-) True XLOC_028835
TCONS_00058237 lncRNA upstream 48989 30104185 ~ 30104943 (-) False XLOC_028844
TCONS_00055866 lncRNA upstream 49339 30104535 ~ 30112222 (-) False XLOC_028844
TCONS_00055867 lncRNA upstream 51453 30106649 ~ 30141117 (-) False XLOC_028844
TCONS_00058238 lncRNA upstream 52550 30107746 ~ 30140716 (-) True XLOC_028844
TCONS_00058239 lncRNA upstream 260607 30315803 ~ 30319511 (-) True XLOC_028848
TCONS_00055863 mRNA downstream 215387 29828668 ~ 29833326 (-) True XLOC_028841
TCONS_00055862 mRNA downstream 227574 29820388 ~ 29821139 (-) True XLOC_028839
TCONS_00055861 mRNA downstream 279409 29758289 ~ 29769304 (-) True XLOC_028838
TCONS_00055860 mRNA downstream 294818 29753347 ~ 29753895 (-) True XLOC_028837
TCONS_00055859 mRNA downstream 372633 29653496 ~ 29676080 (-) False XLOC_028835
TCONS_00055868 mRNA upstream 90788 30145984 ~ 30153910 (-) False XLOC_028845
TCONS_00055869 mRNA upstream 90788 30145984 ~ 30154626 (-) False XLOC_028845
TCONS_00055870 mRNA upstream 92600 30147796 ~ 30174588 (-) False XLOC_028845
TCONS_00055871 mRNA upstream 114031 30169227 ~ 30174588 (-) True XLOC_028845
TCONS_00055872 mRNA upstream 153994 30209190 ~ 30249797 (-) False XLOC_028846
TCONS_00055851 other downstream 1193036 28829894 ~ 28855677 (-) False XLOC_028829
TCONS_00055850 other downstream 1506578 28542021 ~ 28542135 (-) True XLOC_028825
TCONS_00055849 other downstream 1616268 28432331 ~ 28432445 (-) True XLOC_028824
TCONS_00055832 other downstream 2907410 27141179 ~ 27141303 (-) True XLOC_028817
TCONS_00055829 other downstream 2949428 27088371 ~ 27099285 (-) True XLOC_028815
TCONS_00055888 other upstream 900145 30955341 ~ 30955504 (-) True XLOC_028861
TCONS_00055889 other upstream 919720 30974916 ~ 30975079 (-) True XLOC_028862
TCONS_00055890 other upstream 930160 30985356 ~ 30985519 (-) True XLOC_028863
TCONS_00055891 other upstream 936685 30991881 ~ 30992044 (-) True XLOC_028864
TCONS_00055892 other upstream 937990 30993186 ~ 30993349 (-) True XLOC_028865