RNA id: XM_036967303.1


Basic Information

Item Value
RNA id XM_036967303.1
length 3892
RNA type mRNA
GC content 0.46
exon number 8
gene id xrcc4
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 11885691 ~ 11915884 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAGAGACGAACTGAAACTGCGGCGTCTGGCGATTTAAACTAGATTTAACACCGGTTGTAGGTTTAAGTATCAGAAGTCGTCCATCGGATATTAAAAGACACAACCAACTATCTAAAGAAGGCTAGTGCAGTTTGAGGTGTGAGATGCATGTGACGGTGCGTGAGGTCTGTATCTCCTCGGAGTCAGAGACTTCCTACTTCCTGCGAGTGGAGTGGAGGGGGCGGGACTTAGGCTCTGGCTTCCTGTTACTGCTCACTGATGGACAGAAtgcatggagaggagaggTATCAGAGGATGCAGTgcgggaggaggcagaggagttGGAGATGCAGACAGATCGTTACATCCAGGACCTCCAGCAGGCCCTGACTGGGACTGGACCCTCTACTGACTACAGCTTCACCTTGACCCATAACCCCGGCCCAATGGCCAACATGACCCTGTCCTACGAGAAGGTGCAGAGGGACATCTCGTTCTGCCTGGGTTCTGTGTTGCTGGGTAAGATTCCAGAGCCAGTGGAGGAGGTTAGAGCGTTACTGACTCACGGTCTAGGACGTGGAACCGCACTGCAGAACCACAACCACTTACTAAAGGAGGAGAACCACAGGCTCAAACAGGAGCTACAACACATCAATGCAGagtTGCAGCGGTTTGTCAGTGGGAAGGAGACACTCGAGTCAGAGCTGTACTCTCGCTTCACCCTGGTGCTGAATGAGAAGAAGGCCAAGATACGCAGTCTGCAGAAGAACCTCACACACCTGCAGGAGACCAGggaagagggagagagcagcagtccAGGGAAGGGAACGAAAAAGACGACAGGACAGACCAGAGAGGaggatgaatatgaagcgagcaCTGATGATGAGCAGTTACAGCCTGCTTCTATAGAAGCCACCCAGGggactTCGCGTAGCCGCAGCCCATTGGACGACAGTCTGAATGACATCCCAGACGTGGCACCCTCCCGTAAACGCCGCTTCCGCCACCTGCAACCTCCTGACACTGTTGCTAAGAGACCGACCTCGGAGCCAGCGCAGAAACCGAGGAGGGACCCCCTGCCATCATCCAGAGCAGCAGCCAATAAGgaccaggctccccagcattctAGTGATGTCATTCCTGATGCTGAGGACCTGTTTGAGGACATCTGAGTTCTAACCACTCACTCCTCAATCAAAttctttccctccctcactcctttcatctctctctccctccatcactttCGTCTGTCACTCTATCAGCCGGTCCCAACTCTCTTAGAACCCCTTCCCCTAATTAACCCCTTCGATGTTTGGAAATCTGAAAGATCTGGATAGGTGTAAACAGTGCGGTGATGGAGCTTCCATCCTATTCCTTCCACCTTACAGATCCAAATGTAAAAGTGTATTATTAATATCATGAATTTGGCATCCCATTTATGGTGATAATGGTAACTAATTTTAAAATGACAAAGATCCAATCAACTATGGATAGTATACCTAGTTTCACTCTGCATACATAAATCTAACGTGAGTCGGAATGTACTTTCACATAcagtgtaaaataaataaataaatatatattcagCGTACAATTGTAAGGTAACCATCCAGGCCCGGCTCGAGGAGGACATGACCGAGGGAACATTTTAaattcatggggggggggggctcttcgACCCTCCTAACAAGTTACCTTAGTCTGAAGCTATTGATGTGCACACCGGTGTCAAACTTGTCCGCAGTATGTATAGGTGCGTTGATAAACCGCAATGTGATGCTGAATTGGAAAAGCTTTGCCAGGAGGGCACCGAGCACGCCAGCTCCAAGGAAACGATGGAGACAACTCTGCGAGAGTATGTCGTTGAAAGCacaaagcattttttaaatattttttttgcaaacagaCAGAAAATGTGTTTTGAAAAATGTTTTGGCAAGCTCACAATCCTATTGCAGCTGGTTGCCTTACAATTGTACAATTTAATCAACATATattgttttaattatttattttagtgtACAGCTATTGTCAGAGGAGTTACTTTCAACGATTCAATGGTAGTCTACGCAGATGAGTATGAAAGTTGATCGATGTCTAACTGTGTTGACATGATAGCTCAGCATATACAAGCTTGTTTCCAAAGCTAAGTAGGATACATGGAGGTAGGCAACTAGATGATAGACTCGTTCTCACTGAAGTGCATTACCCCTCATATACCTGTAGGAGTCGCTGTTCAGGCAGGAATTGTTGGAGTGGATTCACATTTTATGTCAATATacgctatatatacacaaaaggatatggacaccccttcaaattcgtggatttggctatttcagccacacccgttgctgactggTTTATAaaatgagcacacagccatgtaatctccatagacaaacattggcagtagaattgccttactgaagagctcaatcattgggtgccacctttccaacaagccagTTTGTCAAGTTTTGGCCCTGCTAgacctgccccggtcaactgtaggtgctgttattgtgaagtggaaacgtctaggagcaacatcgGCTCAGCtgagaagtggtaggccacacaagctcgcaGAACAGGACTGGCAAGTGCTGAACcgcgtagcgcataaaaatcgtctgggtttccatggccgagcagcaacacacaagcctaagatcaccatgcgcaatgccaagcgtatgctggaatggtgtaaagcttgctgccattggactctaggAGCAGTGGAAATACTAGAGTCCAattggcctaatcgcccaacatcagtgcccgacttcactaatgctcctgtggctgaatggaagcaagtccccgcagcaatgttccaacatatagcagcaaagggggaccaactccatattaatgctcatgattttggaatgagatgttcgacgagcaggtgtccacatacttttggtaatgtagtgcaCCTCTTTATTTAGGTTGATGGCATGATGTTGAAACGTTGACTTTGATTCAAACACCATTTTACTCTTAACATTGAAACAACAAATATAGGATGAAAAATATTTTTACCATTTCTATGTGGAGTTTTCAACACAATTTCAACATTTACAAAGTTCTGATGATTATGTTGAAATTAGATTGTTAGTCAGGTTAGTATTTAAATTGAATCTTTATCCTAATTTCAATGTTTGCAATGCTTGTTGAAATGTGATGAAAACCGCGTTagtttactttttgaaaatccaaATGTGCTTTCCACGTGGATTCCACGTCCGCAATAGGTTGACAAATGACGTTGAAACATCGGTTCAACCACTGTGTTCCCAGTGGGTTGCTtcagtctctctatccctctacacAGGGGTGGCCAACACCTGGTTCTACTAATCAGCCTTGCTAGAACCTGACTGAGCATGTCAAGGTCCTGGCTCGCGTCCTACCCCTTCCTCTACCTAACCTAAGGACCACCAGGACCTTGACATGTCGCATCGGGTTCTAGcaaggctggaacaaaagcctgaatACCTAGCTCGACACCTCTGCACAGCCACCCTTCCTCTACCAGTATTACTTCCCGCTCTTCTCTAGCCTCCATCTCGCTGTTAATCCTCCACCACTccctcccatctccttctctattACTGTCCCTACTCAGCCCAGCCCACTACTACACAGAGGAAGTCAAGGAGACCGTTATATAGAGAGAAGGGAATtagacatatatatattttttgtagtgCAAATTTATAATAATTTATAATGCTGTAACAAAGGGGATCTTTTTGTACTCGATATGGACAAAACATTAACTGTGTAAAGATAAGTCTTTGTGCTGTTTTTAGTATGATGAAGAGAAGTGTTGGTTCTTTATGTGTATGAAACACGAGTAAAGTGTAATAAAAACGTAGGTTAACAACA

Function

GO: NA

KEGG:

id description
K10886 XRCC4; DNA-repair protein XRCC4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2461085 lncRNA downstream 89155 11795221 ~ 11796536 (-) True G2152298
TU2461108 lncRNA downstream 95565 11789510 ~ 11790126 (-) True G2152321
TU2460874 lncRNA downstream 150689 11734772 ~ 11735002 (-) True G2152122
TU2460872 lncRNA downstream 154378 11731078 ~ 11731313 (-) True G2152120
TU2460863 lncRNA downstream 159020 11726464 ~ 11726671 (-) True G2152111
TU2461176 lncRNA upstream 24753 11940637 ~ 11941328 (-) False atg10
TU2461184 lncRNA upstream 38648 11954532 ~ 11975619 (-) True G2152389
TU2461222 lncRNA upstream 90191 12006075 ~ 12006339 (-) True G2152426
TU2461231 lncRNA upstream 100798 12016682 ~ 12019987 (-) True G2152435
TU2461248 lncRNA upstream 110464 12026348 ~ 12026560 (-) True G2152451
XM_036967200.1 mRNA downstream 695 11853329 ~ 11884996 (-) True vcanb
XM_036967201.1 mRNA downstream 697 11853329 ~ 11884994 (-) False vcanb
XM_021590624.2 mRNA downstream 230581 11644033 ~ 11655110 (-) True LOC110509627
XM_021590622.2 mRNA downstream 360477 11523453 ~ 11525214 (-) False LOC110509625
XM_036968069.1 mRNA downstream 375749 11503158 ~ 11509942 (-) True LOC118945324
XM_036968101.1 mRNA upstream 24746 11940630 ~ 11944005 (-) False atg10
XM_036968099.1 mRNA upstream 24746 11940630 ~ 11944084 (-) False atg10
XM_036968097.1 mRNA upstream 24746 11940630 ~ 11944491 (-) False atg10
XM_036968100.1 mRNA upstream 24746 11940630 ~ 11945663 (-) False atg10
XM_036968095.1 mRNA upstream 24746 11940630 ~ 11945768 (-) False atg10
TU2460859 other downstream 163212 11722072 ~ 11722479 (-) True G2152107
TU2460707 other downstream 360539 11456618 ~ 11525152 (-) True LOC110509625
TU2460556 other downstream 641631 11241994 ~ 11244060 (-) True LOC100135966
TU2460472 other downstream 891812 10993166 ~ 10993879 (-) True G2151771
TU2460429 other downstream 916390 10951249 ~ 10969301 (-) True ttll11
TU2461170 other upstream 25578 11941462 ~ 11944153 (-) False atg10
TU2461172 other upstream 25578 11941462 ~ 11944153 (-) True atg10
TU2462005 other upstream 733292 12649176 ~ 12649495 (-) True G2153174
TU2462547 other upstream 1171569 13087453 ~ 13091356 (-) True G2153683
TU2463277 other upstream 1812949 13728833 ~ 13731096 (-) True G2154361

Expression Profile