RNA id: XM_036968097.1


Basic Information

Item Value
RNA id XM_036968097.1
length 1916
RNA type mRNA
GC content 0.50
exon number 6
gene id atg10
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 11940630 ~ 11945825 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTGGGATAGTGGGGTGGTTTTGGGAGCAGGGTTAGCTGGTAGGGACATTTAGGCTGAAACACAGCCCATACGGTAGGTGGCGACATGCACCTATAACATTTGTTTGTGAACCGCCATAATACCGAAAGAGATGGAGAAGAAGAACAACAAAACAGCTGCACTGGAATCACAGCAAACTACGTGTGACATAATAACCATCAATATTTCTTATACTTAAAATGATCTAGACAAATAATTCAATGAATAATTAAATTAATTCACTAGAAACCACCTGTGAGGAACATACAGTTACTGGTAAGGGATCGTGGAATTCAGTCAGTTTAGCACAAGCGCCAAATCTGATTGGCTCTTTCCTCATTCTCCATCCGCAAACGAGATCCCGGAAGTTGCCCCGagATGAGTAGCTGTTTTCTGGATGAGGAGACGTTCTGTCAGTGCTGTCAGCTTCTCCTCCAACACTCCCACTCCCTCTGTGACGGCTGGAGCTGGGAACAAGTGAAGGGTTCTGAGGGCTACCTGAGGAAGACTGCCCTGGGGACCGGCAGAACCAGATGTATCCTGGACCAGCAAGGAAACAGTTCAGACCAGCACCAGGAGAggaccttctccctctctttccataatgatgaagatgatgaagatgatggcgCAGTGTGTTGTATACAGGAGGAGAGCAGTAGTAGCAGTGTCGTTCAGTATGAATACCATATCCTCTACTCCTGCAGCTACCAAACTCCTGTCCTCTACTTCAGAGCCTCAACCCTGGagggTAGGAGTCTCTGTCTCGAGGAGGTATGGGACAGTGTTCATCCtaactacagacagagactacAGCACAGACCCTGGGACACCATCACACAACAGgAACACCCGTTGCTAGGCCAGTCGTTCTTTGTGCTCCACCCCTGCAGGACAGAAGAGTTCATGATGCCTGTTCTAAAAGCTGCCCTGGAAGAACACCGACAGGTGAACTACATTGTGACCTGGCTCAGTGTGGTGGGTCCTGTTGTGGGACTGGACGTTCCTCTGAGCTACTGTACACAGGTACCTGAACCCCCGCACACCCCCTCCAGCTCTCCACAGCCCCCCTCCAGCTCTCCACAGCCCCCCTCCAGCTCGCCACAGCCCCCCTCCAGCTCTCCACAGCCCCCCTCCAGCTCTCCACAGCCCCCCTCCAGCTCTCCACAGCCCCCCTCCAGCTCTCCACAGCCCCCCTCCAGCTCTCCACAGCCCCCAGCCCTAGGGACAAAGCCAGGCTGAATGGTTCTCCCATCTAGCGTGGACAACACATCATTCCAAAGCGAATTTCCATTGGAGCCAGATTTGACATCAGCTTGAGATGTGTTGATGAGGTCTGTCCAGTGGGCATGAGATGGAGGACATGGCAGCTGCTTTTCACAGCAAGTCTCTAGAGAACTGTTACATGAAGCACTCTGCTGGCACCTAGTGGTGAGAAACATTACTGCAACTCTACAGGCCTGTCAGAACTGCTAGGTTGAATGAGATCAGGTGATGGATCTGAGAAGAGGGAGCGGGGATGACGTATAGATCTGGGACAGGGTCATACTATGGGCTTCAGTGCTGATATCTGTGAAAGGATAAAACATGACACTTCTCCTTTTGTCAGAGCAGACCTGGTCTTAGGAGGTTAGACAACCACGGCGCAACGAAAGAGATGTCTATTGATTTCTATGGGAGCTACTCTGTCCTTGACAAAGTTGTTTTGGAACAAGACAAATGAACGTCTTTTGTCCCTGGATAGGggactgaaaatgacgtcagatGTAACTTGTGTTCCCTATGACTTCAAACCTGAACTTTTTAAGTACACCTCTCATTATCACCTAACATGTCCAACAATCATGTCGGAACTTTTTGATTTCTTTGCAATAAAGTTGATGACAAACACACTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2461147 lncRNA downstream 45426 11894709 ~ 11895204 (-) True G2152360
TU2461085 lncRNA downstream 144094 11795221 ~ 11796536 (-) True G2152298
TU2461108 lncRNA downstream 150504 11789510 ~ 11790126 (-) True G2152321
TU2460874 lncRNA downstream 205628 11734772 ~ 11735002 (-) True G2152122
TU2460872 lncRNA downstream 209317 11731078 ~ 11731313 (-) True G2152120
TU2461184 lncRNA upstream 10041 11954532 ~ 11975619 (-) True G2152389
TU2461222 lncRNA upstream 61584 12006075 ~ 12006339 (-) True G2152426
TU2461231 lncRNA upstream 72191 12016682 ~ 12019987 (-) True G2152435
TU2461248 lncRNA upstream 81857 12026348 ~ 12026560 (-) True G2152451
TU2461267 lncRNA upstream 94163 12038654 ~ 12038943 (-) True G2152470
XM_036967303.1 mRNA downstream 24746 11885691 ~ 11915884 (-) True xrcc4
XM_036967200.1 mRNA downstream 55634 11853329 ~ 11884996 (-) True vcanb
XM_036967201.1 mRNA downstream 55636 11853329 ~ 11884994 (-) False vcanb
XM_021590624.2 mRNA downstream 285520 11644033 ~ 11655110 (-) True LOC110509627
XM_021590622.2 mRNA downstream 415416 11523453 ~ 11525214 (-) False LOC110509625
XM_036967791.1 mRNA upstream 17472 11961963 ~ 11966292 (-) False zcchc9
XM_036967790.1 mRNA upstream 17472 11961963 ~ 11966304 (-) True zcchc9
XM_021590654.2 mRNA upstream 182318 12126809 ~ 12127782 (-) True LOC110509644
XM_036968019.1 mRNA upstream 205875 12150366 ~ 12159825 (-) False fgfr1b
XM_021590656.2 mRNA upstream 205875 12150366 ~ 12178844 (-) False fgfr1b
TU2460859 other downstream 218151 11722072 ~ 11722479 (-) True G2152107
TU2460707 other downstream 415478 11456618 ~ 11525152 (-) True LOC110509625
TU2460556 other downstream 696570 11241994 ~ 11244060 (-) True LOC100135966
TU2460472 other downstream 946751 10993166 ~ 10993879 (-) True G2151771
TU2460429 other downstream 971329 10951249 ~ 10969301 (-) True ttll11
TU2462005 other upstream 704685 12649176 ~ 12649495 (-) True G2153174
TU2462547 other upstream 1142962 13087453 ~ 13091356 (-) True G2153683
TU2463277 other upstream 1784342 13728833 ~ 13731096 (-) True G2154361
TU2463349 other upstream 1836168 13780659 ~ 13782254 (-) True G2154418
TU2463583 other upstream 2056034 14000525 ~ 14010167 (-) True G2154637

Expression Profile