RNA id: XM_036967788.1


Basic Information

Item Value
RNA id XM_036967788.1
length 2825
RNA type mRNA
GC content 0.50
exon number 14
gene id LOC110509639
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 11955624 ~ 11961875 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcaggcctaccactgttttcaatggctgtcatttttattataaggcgaaatccttccagattgcagttcctagggcttccactagatgtcaacagtcttgtTTTTGATTTTCCTAATCTGCTATGTTCATTCTCCTAGCCTGCTGTGTTAGTTTCCTAAGTAACCTGCTACGTAAAGTCACTTCTGTCTGTAGCTGGGTTAGGCTTGAGATTTTTGAATGTGTATGAATGCAGAAAAACACCACTCGCAAACCAGATAGCAAAACCCTCAAGGAGatttgtttgctagctagctttcAAAGTTGTATGtaaattaaaacatgtttgtGACGCTGTATGGTATTTTATGATAACATTTTTTTATCTATCGCTCCTAAAAACGCTTTTGATACTGTTTAAAAATCTCTTGTAGTTACTTCAGTCTCCAGATAGATATTATTGGTCTATTCTGGGGTCGAGAGTACTATCATCACACTGGCCAGTCAGAGTCCACctgcagtgcgtgtgtgtgtatgtgtgtgtgtaccagccaAGTCTCAGGAATATAGAGGATTGTATGTCATATCATATTACTgagtttgttgttgtttgttgttgttgttgtttggtgACAAGTGTCTTGTCCAGTTTTCCCCCCCAATgccggggtgtgtgtgtgtatgcgcgccaCACGTGGGTGTGTCATCAAACAGACAGAGGTTGTTATTGGAACTCATTGCCACACTGTGAACCAGtgtttgtgttacttcattaTAGGGCTCCAAGCCACAGATAAGGTTTACAGATAGAGAGGAGGGTGGGACAAGGCAGGGTTACTTTTACTTAAAGGGTATGTGATTGTCACTGCCCTTTCACTCACTTGCTCACACTTAGGGACTGAACGAGGCTCGTACACGGGCTGCTCGTTTTCTCTACACTCTCTGCACACAGAAGCAATAGGGTAATGATGACCCAGAGCCTCCAGAATGGCTTCAGTCTGGAGAACCGCTACCTCCAGGATCTGAAGgggcctctgtctgtccctccgccTGCTCAGGGTGCACAGATCCTGGGTGTACGCCGGGGGTCAGGCCCTGTGGAGCCCCATAAGGACCAAGAGATTCAGAGGCATCGGTCTGGCACTGTAACCGGTCAGGGTGCTTCTCTTCTGGGCTCAGGTCTTGGGCAGATCCCTGCTCCTATAGATGTCCAGATGTGCCAGTCTATCCAGCCACGCCATGCAGATCACCAAGGAGACCTGAGTACTGGGCAGCTACTCAAATGGATGGACACCATCGCATgcctcacgtgtgtgtgtgtttgtcccttaGCTGAACGTCATGCTGGGACGGCGTGTGACACTCTCCATGGACGACATCCAGTTTGAGGAGACTGACAGGGTTGGTCAGGTGATCACCATCACGGTAATAGAACATTCACCACAAGCATGGAGCCAGCGGGACCAGAAAAGGTGGTGTTGCGGCCGGTGGAAAACCTGGGTTCTGCAGAGGAGCAGCTGCTTCATTCTCTGGCCTCAGAGAGACGAAGACTCTACAACGAACAGACGTTCAGTACCCTGCTACAAGACTACCGCCCACTAGCCAacgGTGGGTGTAGCAGGAGAGACCCACAGTCTGCCGTGTCCACAGCGTTCACGCATGTGGAGAGCGTCGAGCTGGTCCTGCCTCCACACGCTAATCACCACGGCAACACCTCCGGACGACAAATCTTGGCTTGGATGGAGAACGCAGCCACAGTGGCAGCCAGtcatttGTGTGGCCGCTTCCCTCTGAGGTCTGTAGACATGTTCCGCTTCAGAGGGCCCTCCTCTGTAGGCAACAGACTGGTCTTTAAGGCTGTGGTCAACAACACATTTAACAACAGTATTGAGGTAGGTGTCCTGGTGGAGGCCTGTAACTGTGAGGAGTGGACCGCGAACAAAGTGTGTCACATCAACAGCGCCTTCCTCATCTACCAGCTGTCTAACACACCTGGAGACTACCTTCCTGTCCCTCAAGTCACATACACCAACAAGGACTGGGAGAGGAGATACCTGTCTGCCATCGTAAGGAGATAATTATTGATGGCTAGAAAGCACACCCTGTCCTGTAAGGAGGAGGCTCCTATCTCTGTCCCCTGGGATAAAAGGAACCAGGTTAAGAGTCAACCCGCATATCACTACAAGACTGGGGAAGCCAGCAGCATCAATGACAGGATCGGTGTGTTTGTCCATGAGGAGGAGCTGCTTTGTGTCCCAAGTTCAGATGGTCATGACCTCTGCCCTCCATGCCTTCACCCTATTGGCTGACCTCACACTGTGACCTCTTTGGGGGACACTATCTCTGTGAGGAGGTAGATGGGGCCGATGAGGAGGAGACAGTGTACCACATTAAATGCCCACCCCCCATCAACGGAGGCAAGAGCCGAGACTTCGTGTTCCCATTGTCAAGGAGACAGCCCTGCGACGACAAGGACCCCTATGTGCTAGGCCTGAGGTCTGTAACCGTGGAAACATCTCCCCccctgacctcgccttctggacgatagcggggtgaacaagcagtggctcgggtggttgttgtccttgacgaTCGTTAGCCCTCACAATTCAGAGACAATGTGTTAAAACCATGTGTTCCAGGTGTGTTACCACAACCAGGTGATGTCAGGCGTGTTGCCGCATGTAACCTGGCAGGCTGGTCTAAGTCTAGGGAGGAGACGGCTAGCACACGTACCACCTTCCCggagagagacaccacacacactaaaCCTGAGTCTGATTTTGGAATTGATACTATCGGGAGACTCATGATTCTAACGAGACACCTCTAGTCTCTAGTCGAGCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2460981 lncRNA upstream 29305 11915932 ~ 11926319 (+) False tmem167a
TU2460983 lncRNA upstream 29305 11915932 ~ 11926319 (+) False tmem167a
TU2460985 lncRNA upstream 29305 11915932 ~ 11926319 (+) True tmem167a
TU2460980 lncRNA upstream 30164 11915915 ~ 11925460 (+) False tmem167a
TU2460972 lncRNA downstream 22476 11984351 ~ 11984826 (+) True LOC110509640
TU2461040 lncRNA downstream 43713 12005588 ~ 12005877 (+) True G2152259
TU2461053 lncRNA downstream 60011 12021886 ~ 12022594 (+) True G2152271
TU2461240 lncRNA downstream 62637 12024512 ~ 12024735 (+) True G2152443
TU2461281 lncRNA downstream 84561 12046436 ~ 12046778 (+) True G2152484
XM_036967916.1 mRNA upstream 4028 11948589 ~ 11951596 (+) False LOC110509638
XM_036967915.1 mRNA upstream 4028 11950148 ~ 11951596 (+) True LOC110509638
XM_021590640.2 mRNA upstream 30164 11915772 ~ 11925460 (+) False tmem167a
XM_021590631.2 mRNA upstream 105315 11821247 ~ 11850309 (+) False hapln1b
XM_021590633.2 mRNA upstream 105315 11837832 ~ 11850309 (+) False hapln1b
XM_021590648.2 mRNA downstream 17566 11979441 ~ 11984838 (+) False LOC110509640
XR_005040486.1 mRNA downstream 88567 12050442 ~ 12053419 (+) True LOC118945327
XM_036968022.1 mRNA downstream 151261 12113136 ~ 12116480 (+) False wdr45
XM_036968023.1 mRNA downstream 151261 12113136 ~ 12116480 (+) True wdr45
XM_021590653.2 mRNA downstream 154769 12116644 ~ 12126226 (+) False zgc:100918
TU2460909 other upstream 189273 11764224 ~ 11766351 (+) True G2152150
TU2460223 other upstream 589132 11360385 ~ 11366492 (+) True G2151555
TU2459342 other upstream 1493404 10461753 ~ 10462220 (+) True G2150729
TU2458634 other upstream 1646545 10302688 ~ 10309079 (+) True LOC110509604
TU2457713 other upstream 2581112 9374000 ~ 9374512 (+) True G2149183
TU2461440 other downstream 338917 12300792 ~ 12307438 (+) True G2152639
TU2462149 other downstream 798005 12759880 ~ 12760490 (+) True G2153316
TU2463200 other downstream 1706414 13668289 ~ 13669170 (+) True G2154294
TU2463318 other downstream 1810833 13772708 ~ 13774088 (+) False G2154391
TU2463316 other downstream 1811872 13773747 ~ 13776134 (+) True G2154391

Expression Profile