RNA id: TCONS_00055867


Basic Information

Item Value
RNA id TCONS_00055867
length 3404
lncRNA type lincRNA
GC content 0.40
exon number 3
gene id XLOC_028844
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 30104185 ~ 30141117 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTCATATGACATAATCACGCCACCGCTAACCcgacccctcacagtgacgtcactaccTCCACTGAGTGCAGTCTCAGCTTGCTCATGCAAGGCtgtatccagatactattgaatgtGTTGAGATCAATGTAGGTTATAAACAGCTTGGTCTGGTGTCATATTTACCAGAGCTGAATATACTTAATGTGTCAAGTTATAAGTCCTGTACAACATCAGAATTAACCGTAGAACAGTTTCAGCAGACCTGATCAGACAGACCTTCAGTCAACTATTagtttgtgctgaattaaactgaacaaactcataTTTGGCTGATAAACTCttaaaggagactgaagtttaCCCATAGTTAAtttctctggtgtgtttgtgtgttcagtgtgagatcaggatcatgtgtgtccagccctctgaagagtgactggtctAAAGAGGATCCACCAGAGTTCAGTGAGGAAACACCATCACCTGCCCAaagGATGATTGCGGAGATGCAGTCAAGGGGGTTGGTGATTAATAACTTACCTTCAGTCCTCCCAGAATCAGCTCGATCTACTACATCTTCTGTGCCTCAAAGCTCTGGAGGTGCAGAAAGTCCATTGTAGCCTCCAAATGAGCCCTTATCTGACAAGAGCTCTGGAGAGTACTACCAGAGTCGTAGTTCATCAAATAAAGATGATAATGATGAATGGATTCCTTGAACGAGGGACAGGCAAACAAGCCCCTCAACTTCAACATGCACACCTCGGCCCAGCACAACTCCCACCACTTCCCCCACTGCAACCCCCACTACATCTGGGCAGAGAAGGCGCAGGGGCAGAAGTAGAGCTAGAGGCAGAGCTGGATCATCAGCACGGGGGAGTGGATCTCAgcaggctgctgctgctgcttctggTGAGGAAAGTTGGCATAATATATCAGAGGCAGATGAGGAACCAGCAGTAATAGCCTTTGCCCCAAAACGTACACCAGGGCCTCAGCTGGTCACTACGTCAAGCTACTCGCCACTTGAGCTTTCTCCACATCTGTCGTGGACACAAAAATAAGAAACACAAATGAACATGCTGCACAAAGGTCTAATGCTGGCAAAAAGTTCCTGTGGATACCGCTCACCGTCAAATACTTCATTTATATTGGAATTCTACTATACATgggactgaaaaaaaaatcaaagacatTAGTAGACTACTGGGCAAGGTTGGACATTTACAGATTTCCCTTTCCACAATTTGCTCTCACGGGCTGGTTATCTGTCCATATCTTGGAACCTTAATCTGTCTAACCTAAAGGACGATGAAGCTAATCAACAAAAAAGGGAACCCCAGACTACGAcagactctgcaaaataaaaccGCTGTGTACGGACATTGTTTCAGCATGCCAAACCAACTTTCATCCCCTCAAGCAGATGGCTGTTGATGAACGTATGATTGCCTCTAAGGCCAGGATTAGTTTGAAGCAATATATGAAGGACAAGCCGACAAAGTGGGGATACAAACTATTTGTCCGTGCTGATTCAATTTGTGGATATACCTGGAACTTTTTTGCATATGAAGGAAAATCCACCTCTGTATCTGGAAAAGGCTTCAGCTATGAGTCGGTCAAACAACTTTAGATTTCTCAATTCTAGGACAGGGATATCAGGTATTTACGGACAATTTTCATACCAGCCCAGCCCTCCTAAGTAatttacttttgaaaaacaccCAGGCATGTGGAACCATACGCCAAAACAGACAAGGCTTTCCGAAAACTAAAATCAATTACCTAGGCAAAAAGGCTAAAAAAGGGGACATTTGGTGGATTAGGGATGGAAAGATACTGTTTGTGAAATGGATGGACACCAGGGAGGTCACCATGTGTTCAACAGTTCACAAAACGTACAGTGAACCGACGGGTGAAGAATGATGAAGGTAACTGGAGAAGGGAACAGATTCCTGTTCCTACAGTGGTGCTGGAGTACAACAAATACATGTGTGGTGTTGACTACTCTGATGCAATGATTGGTTATTACAATATTCTCCATAAAACCAGAAAATGGTACAAGACCTTCTTCTTACATTTTATTGACATTGCTGTCGTAAACATTATTCACAGGGAGCTTTCAAATCTCCAAAACAAAACCCCTCTGACACAAAAAAAGTTCAGAAAAAATCTAATCATGGAAATGATCAAAGACAccatagagcagtggttcccaacctggggtccacAAGAGTTAACAAGGGGGGCGCaggagaggataagtgttgaggtaggaataaaaatgctccactattatatagggctgtaaaatttattgaaaatccgatttcgatttcaaacaattataataaaagcattaatcgagataaagattattgcatcatatatcgccccctttccagttgtacacgtgttgctcttaaaagcgcggaAGAGCGcgtacttatgtgtgtgtgcagcacgcacACTCAGTCAGAAGCATACGGCCGGTCAGCTTTCGCAAACtaagacgagcagaggagcgcagacatctaaagtcatcttaacgcgagcgctttaatggtcaaataggtgtcaacgcggtgtttagttattattttttattaaccctcatttgtgtaataaacaaacgagttgaggatcaaaagacacgtgaaagagaaaccaaagaGACAACGAGAAATATTcttgctgccgcctgtttttatgattattaatcaaacaacgagaAAAATCCCTCACTTGTCTTGACtaaaggactgctgtagctaaagtgttattcttacagtgaagatgcttaaagcagtttgtttaatatttttattctgttgtatttatttctctttcctttgcagggtggaaaaaaactgtatatatacacttgaagtcagaattattaaccctcctgaatattagcaacccttttcctcccaatttctgtttcatggagagaagtttttttttaaaacttattaatagttttaatatctcgtttttaattactgatttcttttatctttgctatgatgacagtacataatatttaacaagatatttttcaaaatacaagcattcagattaaagtgcagttcaaagggttaattagggtaataaggcaagtcatggtataacagtagtttcttcagcagacaatcaaaaatatatattgcttaagggggctaataatattgaccttaaattggtttcaaaatatttaaacctgcttttattctagctaaaataaaaaaataagcctagaagaaaaaatattataggaaatactgttaaaattccttgtcctgttaaacataatttgggaaatatttataaaaaaaatatttcccaggagcgcttataattttgactttaacgtgaatatgatttttcccaaaattaagcagccctactattatatatg

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043167 ion binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000194487

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058237 lncRNA downstream 1706 30104185 ~ 30104943 (-) False XLOC_028844
TCONS_00058236 lncRNA downstream 139515 29965278 ~ 29967134 (-) True XLOC_028842
TCONS_00058235 lncRNA downstream 139609 29965278 ~ 29967040 (-) False XLOC_028842
TCONS_00058234 lncRNA downstream 284949 29821320 ~ 29821700 (-) True XLOC_028840
TCONS_00058233 lncRNA downstream 399430 29705193 ~ 29707219 (-) True XLOC_028836
TCONS_00058239 lncRNA upstream 174686 30315803 ~ 30319511 (-) True XLOC_028848
TCONS_00055878 lncRNA upstream 222645 30363762 ~ 30364502 (-) True XLOC_028851
TCONS_00058240 lncRNA upstream 264737 30405854 ~ 30407827 (-) True XLOC_028852
TCONS_00057363 lncRNA upstream 399882 30540999 ~ 30545416 (-) False XLOC_028856
TCONS_00057362 lncRNA upstream 399882 30540999 ~ 30545416 (-) False XLOC_028856
TCONS_00055864 mRNA downstream 49041 30045493 ~ 30057608 (-) False XLOC_028843
TCONS_00055865 mRNA downstream 51453 30048713 ~ 30055196 (-) True XLOC_028843
TCONS_00055863 mRNA downstream 273323 29828668 ~ 29833326 (-) True XLOC_028841
TCONS_00055862 mRNA downstream 285510 29820388 ~ 29821139 (-) True XLOC_028839
TCONS_00055861 mRNA downstream 337345 29758289 ~ 29769304 (-) True XLOC_028838
TCONS_00055868 mRNA upstream 4867 30145984 ~ 30153910 (-) False XLOC_028845
TCONS_00055869 mRNA upstream 4867 30145984 ~ 30154626 (-) False XLOC_028845
TCONS_00055870 mRNA upstream 6679 30147796 ~ 30174588 (-) False XLOC_028845
TCONS_00055871 mRNA upstream 28110 30169227 ~ 30174588 (-) True XLOC_028845
TCONS_00055872 mRNA upstream 68073 30209190 ~ 30249797 (-) False XLOC_028846
TCONS_00055851 other downstream 1250972 28829894 ~ 28855677 (-) False XLOC_028829
TCONS_00055850 other downstream 1564514 28542021 ~ 28542135 (-) True XLOC_028825
TCONS_00055849 other downstream 1674204 28432331 ~ 28432445 (-) True XLOC_028824
TCONS_00055832 other downstream 2965346 27141179 ~ 27141303 (-) True XLOC_028817
TCONS_00055829 other downstream 3007364 27088371 ~ 27099285 (-) True XLOC_028815
TCONS_00055888 other upstream 814224 30955341 ~ 30955504 (-) True XLOC_028861
TCONS_00055889 other upstream 833799 30974916 ~ 30975079 (-) True XLOC_028862
TCONS_00055890 other upstream 844239 30985356 ~ 30985519 (-) True XLOC_028863
TCONS_00055891 other upstream 850764 30991881 ~ 30992044 (-) True XLOC_028864
TCONS_00055892 other upstream 852069 30993186 ~ 30993349 (-) True XLOC_028865

Expression Profile

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