RNA id: XM_036968019.1


Basic Information

Item Value
RNA id XM_036968019.1
length 4856
RNA type mRNA
GC content 0.50
exon number 16
gene id fgfr1b
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 12150366 ~ 12178844 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcctcctttctttctttcttgcttgctctctctccctctctctctctctctcggcaggGCTGCGTCTCATTAGccttttgtgtgtgcgtgcgtgcgcttcCGTTTTGCTCGCTTGTGTGCGTTTTAACGTGTGcttactctccctctttcttatTTGATCTCTTTCATGCCAGGCTGAGGGTTCTGGGTTCAGGCTGCTTCCATGATGGTTCAATCCCACTGACTCTGTTCCGCTGTCTGGAACTGCTCAGTTAGCAGTGGGTCTTTATTCTGAGACAGAGGACAGAACACACTCTTCAATTTGGGGATGTGGAGGCTCTTTATTGGTCTAGAAAGGACCTCAGTCTTCAAGGTTTGTCCATTTAGTTAAAAAAACTGAGGATGTTTACAGGGATTCTTTCATGGCGCAACCACGGTTTAGCTTCTCCACCGCTGGCTATGGTGTACATATCCTGtccacgcacgcacatgcacacagttGGTTGGATGTGGAACAGAAAGGCTGTGTTTGGTAGGAAAGGATGAATGCTGTCTGAAAGGAGGTGTTTTTGTTCCCTCTATTGGTGAGTTGTGTAACCACCGGCCATCCTAAACCAGCCCTAacaccatggtgtgtgtgtgtgtgcgtgcttgcaaaTGTGTGTTTGATACTGTTGTTTTGAAACGCATCAAATTCTTGTTTTTCTCTCAGTCAAAAACACCAAAAATGTCACTTCTGCTGCAAACAATTTTGCCATACACGAAGGCTGTTTCCAATtttctatctctgtctcgctGCTTCTTTCAAATAAAGCTGTTGGTCTTTGGATTTCAACCACCTCCCCCTGCTCTGCTCTTGTTTAGTGGATTCCGTTCTTCTTTTCAGTTATTCTATCCTTGTTTGTTtgtatctattctctctctccaactctctctctgtctatctttgaCAACCTTTCATTAGGAATGTTCCCCCTGCCACGAGCAGACCGTATTCAGGACTTCCCATAATGCAGTTTCTGTAAACCTCTCCCTGTAGATTACAGACCTGCTGTGGTGAGGCTGGGAGCTGGGATTCTGGAATGGTCTATGTCACTCTGTGGTGGTGATGATTATGGACCTAATCTCTCTAGATTACAGTAGATATGATGATGAGTCGTGCTTTCTCTGGTCGCAATCCTGCTGAGATGTGGGGAGGGAAGGGACCTGCGGCAGAAAATGCCCTTAGTAATGTAGTAGTTCTATATTGTGTAGAAATCAATATATACATTCTGCTGGGAGATGGAAAGGGATGTGTGGTAGAATATATCCCTGCTTATAGTAATCACTGATCTGACGTGGCTGGATCTGTGAATGCTGTGGACTGGAACCCTATCAGACTGTGTCTAATGGTAGAAGGAAAAGGGCTTTTTTCTTATTCAACATATTCAAACAGGACCCATTATTAAAGTTCTGGAGCCCTCCTTCCTCAACTCACCCTCACACCCATCCTTGCCCTTTTGTTTGCAGCCATTTGTCAGGATGAAGGTGCTGATGATTTAGTGTGTTTGTTTATCTCTGAGCTTGGGGTTAGGGAGCTACGTGGGAACTCTGAAGGAGCGGTGGTGCGTGCGCTGTGGCGACAGTCGAGGCACCTTAAAAAGGGGTGAAAAGctGACATGCTTACATCGTCGGAGGATGAAGACGATGATGAAGAGTCTTCCTCAGAGGAAAATAAACTGTACAACAACCAGAAGCTCCAACcggtggctcctcagtgggtgactccagacaagatggaaaagAGGCTCCATGCCGTTCCTGCCAGTAAGACTGTTAAATTCCGTTGCCAGGCGACTGGTAATCCCACTCCAACTTTGCGGTGGTACAGGAATGGAAAAGAGTTCAGGAGAGACCAGCGGATTGGAGGCTTCAAGCTCAGAGACCACATGTGGACTATAATAATGGAGTCTGTGGTTCCGTCTGATAAAGGCAACTACACATGTCTGGTGGAGAACAAGCATGGCAGcctcacacacacctaccagCTGGACGTAGtggAACGTTCCCCTCACAGGCCCATCCTCCAGGCAGGCCTGCCAGCTAATCGTACGGCAGTGGTGGGTAGTGACGTAGAGTTTGTCTGTAGAGTGTTCAGCGACCCTCAGCCCCACATCCAGTGGCTCAAACGCATCACCATTAACGGCAGCAGAGTGGGGACAGACGGACTACCCTACGTACGTGTActgaagACTGCAGGGTTTAACACcacagacagggagatggaggtgTTTACTCTGAGGAACGTGTctgtggaggatgagggagagtacACCTGTCTGGCAGGAAACTCAATAGGAATGTCTCACCACTCTGCCTGGCTCAGTGTGATCaaagACGTGCCTCCCTCCCCTGTACCGTCTCAGGCCTACCTGCAGATTTTCATCTACTGTGTCGGCTTCTTCATCATCATGCTCCTAATCGCCATAGCGACCGCCTGCCGATTACGCTGCTCCCCGAAGAAGAGCGACTTCAGTAGCCAGCTGGCTGTTCATAAACTGGCGAAGAGCATTCCCCTACGCAGACAggtGTCAGtagactcctcttcctctctgcagtCTGGGGTGTGTCTGGTCAGACCCTACCGCCTCTCCAGCGGAGCCACGCCCAACCTGGCCGGCGTGTCAGAATATGAGCTGCCTGCGGACCCGCTCTGGGAGCTGTCACGAGACAGGCTGTCTCTGGGGAAGCCACTGGGTGAAGGATGTTTTGGTCAGGTGGTGCTAGCAGAGGCTGCAGGTCTGGACAGAGAAAAACCCTCCCGTCTCACCATGGTCGCAGTGAAGATGCTTAAATCGGACGCCACAGAGAAGGACCTGAGTGATCTGATCTCTGAGATGGAGATGATGAAGATGATCGGGAAACACAAGAATATCATCAACCTGCTTGGAGCCTGCACACAGGACGgcCCTCTCCACGTGGTGGTAGAGTATGCATCTCAGGGCAACCTGAGAGAGTACCTGCGGTGTCGGAGGCCTGTGGGTCTGGAGTACTGGTCTGGGCCTACCCAGGCCCCCTTGGACACCCTGGAGGTCAGGGAGCTGGTGTCTGCTGCCTATCAGGTGGCAAGGGGCATGGCTTACCTCGCCTCACAGAAGTGTATCCACAGGGACTTGGCAGCCAGGAATGTGTTGGTGACAGAGGACAATGTGATGAAAATCGCAGACTTTGGGCTGGCCAGAGACATCCATCACATAGACTACTACAAGAAGACCACCAACGGTCGCCTGCCAGTGAAATGGATGGCACCGGAGGCTCTGTTCGACCGCATCTACACACACCAGAGTGACGTgTGGTCGTTTGGTGTGTTGATGTGGGAGATCTTCACTCTAGGAGGCTCTCCCTACCCTGGTGTCCCCGTGGAGGAGCTGTTCAAACTGTTGAAGGAGGGACATCGTATGGACAGACCAGCCGCCTGCACAGAGGAGCTGTACATGGTGATGAGAGACTGCTGGCATGCTGTTCAGTCTCACAGGCCAACCTTCAAACAACTGGTAGAGGATCTGGATCGCATGCTCTCACTCATGGCCAACcaggAGTATTTGGATCTGTCCATCCCTGCGGTCCAGTATTCTCTAGTGGGTCCAGACACCAGCAGCTCCTCTGACTCGGTCTTCTCCAGGGAGCCGACCCACGGAGCAGAGTACTCTTCCCGGAGCCCGTCCCGGACCTCCACCCTGCTCTACAACCAGCACACCCCCCCTAGGACCCCTTCTCGGGCCTCTACCCTGGCCTACGACCACCATATTCCCTCCCGGACGTCCACCCTGACCTACACCATACCTACCCGGCACACCACCACCCGGGGACACAGCCAACGTTGATCTACCAAACCCTTGCCGCACACCTTAACCTATCCACCTCCCTTTTAGTCAGTCCCTACCATGAGCTCTGCCCCCAGCCCCTCCTACCCCCCACCCCCTGACTTCTACCCCCAGCCCCTGCTTGGTGACTGGGAGGCCTACCAGAGGGGAGGACACTACCTGAGTGCTTTAACCCCTTGTTCTCCAGTCTGCCCCGGAGCGGGGTTCATTTGACCTGCTTGGCATTTCTGGGGAGAGGCTCATTAACAAAGATGAAGACAATGGcaaagatagacagacagagggtcATAACAGAGTCATAAGACATGCAATAGACTTTTCACAAAGactcttctgttctcctccctattaATATGGGGATACTCACACAGGAGCAAGAGGAGGAGGCTGCTAAACATGATTTTCATCGCCATATTATGCACCAAACTGCTGCTTCGTGAGTAAACCCATACAGGCTATTAAAAAGGAAATCTTATCAAGGGAAAACAATTAATTCActtctttttttattgaacctttatttaaccaggcaagtcagttaagaacaaattcttatttacaatgacggcctaccaaaaggcctcctgcggggacgggtgctttttatataaatatattatgaATTGTGTCATCTGAAAATATATTTCCAGggttacttttttttttagatgCTTGCTTGTTTTTATCCCTGTCAATGAAAGAGTGGAGTGGATATGATGCTATGTGTTCGCATCAGAGGAAAGAAGTAGGTAAGATGCTATGTGTTTTAATAAGCTAATATCATACCAGCAGTGTTAGTCAGGGCTACAGTTACCGTATCACCCTATAGTCTAGACTCTATGGACACCAGTGTTACGTTGAAGGTAATGATGATGTGTGCTGAGGATAATGTTCATGGTAATGTAAATGGTTTTAAAACAGTGGCAAATGCACTTATCGCCAATGGAGGTCTACCTTCCTTTACAGAGGATGCCTTTATTTGAAGGACTGTAAAATAAAAGACAACAGTGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2461682 lncRNA downstream 4197 12145584 ~ 12146169 (-) True G2152858
TU2461679 lncRNA downstream 9948 12139654 ~ 12140418 (-) True G2152855
TU2461665 lncRNA downstream 33869 12113197 ~ 12116497 (-) True G2152843
TU2461655 lncRNA downstream 44909 12105255 ~ 12105457 (-) True G2152834
TU2461312 lncRNA downstream 82868 12067274 ~ 12067498 (-) True G2152515
TU2461704 lncRNA upstream 33424 12193249 ~ 12193554 (-) True G2152880
TU2461673 lncRNA upstream 55152 12214977 ~ 12216997 (-) True G2152850
TU2461715 lncRNA upstream 59062 12218887 ~ 12219105 (-) True G2152891
TU2461716 lncRNA upstream 59369 12219194 ~ 12219474 (-) True G2152892
TU2461717 lncRNA upstream 59722 12219547 ~ 12220652 (-) True G2152893
XM_021590654.2 mRNA downstream 22584 12126809 ~ 12127782 (-) True LOC110509644
XM_036967790.1 mRNA downstream 184062 11961963 ~ 11966304 (-) True zcchc9
XM_036967791.1 mRNA downstream 184074 11961963 ~ 11966292 (-) False zcchc9
XM_036968096.1 mRNA downstream 204541 11940630 ~ 11945825 (-) False atg10
XM_036968095.1 mRNA downstream 204598 11940630 ~ 11945768 (-) False atg10
XM_036967297.1 mRNA upstream 35273 12195098 ~ 12201043 (-) True march5l
XM_021590663.2 mRNA upstream 77878 12237703 ~ 12263143 (-) True npy8ar
XM_021590664.2 mRNA upstream 153316 12313141 ~ 12320957 (-) True zgc:86599
LOC110509322 mRNA upstream 193850 12353675 ~ 12363879 (-) True LOC110509322
XM_036968151.1 mRNA upstream 397307 12557132 ~ 12627138 (-) True gfra2b
TU2461170 other downstream 206213 11941462 ~ 11944153 (-) False atg10
TU2461172 other downstream 206213 11941462 ~ 11944153 (-) True atg10
TU2460859 other downstream 427887 11722072 ~ 11722479 (-) True G2152107
TU2460707 other downstream 625214 11456618 ~ 11525152 (-) True LOC110509625
TU2460556 other downstream 906306 11241994 ~ 11244060 (-) True LOC100135966
TU2462005 other upstream 489351 12649176 ~ 12649495 (-) True G2153174
TU2462547 other upstream 927628 13087453 ~ 13091356 (-) True G2153683
TU2463277 other upstream 1569008 13728833 ~ 13731096 (-) True G2154361
TU2463349 other upstream 1620834 13780659 ~ 13782254 (-) True G2154418
TU2463583 other upstream 1840700 14000525 ~ 14010167 (-) True G2154637

Expression Profile