RNA id: LOC110509665


Basic Information

Item Value
RNA id LOC110509665
length 3113
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC110509665
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 13226407 ~ 13230321 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAACACTATGCCCAAGGTAAGGAAAGCACTATACCCGAGGTAAGGAAAACACTATGCCCAAGGTAAGGAAAGCACTATACCCAAGGTAAGGAAAGCACTATGCCCAAGGTAAGGAAAGCACTATGCCCAAGGTAAGGAAAGCACTATGCCCAAGGTAAGGAAAGCACTATGCCCAAGGTAAGGAAAGCACTATGCCCAAGGTAAGGAAAGCACTATGCCCAAGGTAAGGAAAGCACTATGCCCAAGGTAAGGAAAGCACTATGCCCAAGGTAAGGAAAGCACTATGCCCAAGGTAAGGAAAACACTATGCCCACTGCTAGTATAACTCTGTACTCCAACTCCTCACAGCAGCTGTTAATGtaaactccccctctctctgctccaatACGGAACAGCACATTAAAAACGAATTCATCTCCTATTCATtcagctctctcacacaccctgAGACAGCTTAGTATTGTATTTCGCCCCCTAGTGGTATCAGGAGAATACTGACAGTCAGGAAATCTGCACTGCAGGCAGAGGTGGCCAGATGCAGAAATCTTCTCCACCAAGCTCCACCAAGTTCCACCTGGTTTTGCTCCAGCCCTGCAGTAGAACACCGGATTCAACTGATCAAGTCCTTAATGGAGACTTTGATTGGTGGCTCAATTGAATCGACATTGTGCAGGCGTTTCTATTCCTTGAAATTGTAAGTTTAACCATATAACCCTATGGATCCCTCTCTAAACCCAGGTGGATAGGAGACAGAAGGAGGGATAACGTAGACATCGCTAACGTGACAGAGGACATTGGGGTGTTGGCTGTGGCTGGACCAAAGACTAGAGATGTTCTACAGAAAGTCACTCAGGAGGACATGAgtggctcctgagtggtgcagtggtctaaggcactgcaactcagtgcaagaggcgttactacagtccctggttcaaatctaggctgtatcacatccagccgtgattgggagtcctatagggaggtgcacaattggcccagagtcgtcctgttttggccgggcgATGCAGGCCTCAAGTTACTCCACTGCAAACCCCTTCAACTGGCTGGCATCAACCTCAGAGCTACCAGGATCTCctacacagGCGAGTTGGGCTGGGAGCTCTATCTACCTCCGAAGGACATGGCAGCGGTGTACCATGCTATCATGAAAGCAGGACAGGATGAGGGAATCGACAACTTTGATGAACTTTGACACCAACCCTCTGGAAGCTGGTCTGGACTACTTCATCAATCTCAACAAGCCTGCAGAATTCATCGGTAAGACAGCACTGCAGGAGATCAAAGCTAAAGGTCTGAAGAGGAAGCTGTCGACGGGACCATCTGGCTCAACGGCAaggTGGTTGGCAACACTACATCAGGGACCTACAGCTACACCACCCAGAGGAGTCTGGCATTTGCCTATCTGCCAGTGGAGCTGTGTCCTGTGGGGCAgagggtggaggtggagatgTTGGGGAGGACATACCCTGCCATGGTAGTCTAGGAGCCACTGGTCTTCACTTAACCCACCAAGAACCGGCTGCAGAAGAAGGTTAAGATTAAGGCCTACACACGGGGggagttagggggggggggggaacccaGCTTAGAACCAGAGTACCAGATCTGGATCCAAATAGGATATCTGTTTTCTTTCAAGTATTTACAGAAAAGGTGTGCTTTATTTAGCTACCTTCTGGTGCTAATTGCGACCCAGGTCCGTTTAGAATCTCCAAACAGAAGAACTGACACTATGAACTATGCTGGTTGACAGTGTTACTGTTATGATTATGGTGACTTATGATGAAAACGACTGACATGTGATGAACAAtactcaaatgacaccctatacccTGTGTGGCCCAAAGTAGTgcacactatacagggaatatggcATCATTTGAGATGGAGACTTTGACAGTGATGTAAAAAAGACATTAAAAATGACTTCCTCTTTCCTATTTGGTCACCTGGTTAGGAAGAAGCAGGAACAACTAAAGTAACCCAGAATATGCATAAGAGCTCAACTCTAGGTTCCAATGTCCATACTAGCATGGACGGATTGTTTGGTTGGAGTCTTGAAACCATTCAACCCATAACTGCTTAGCAACAGAGGCAATCATTACTGATAGGTGGCActtcatttttaccagcatgtcacctgtgcaactagagacaaaaaaaaaaaaaaactctagatcacctttactccacacaaagAAACGCATACAAGTTCTTTCCtcaccctccctttggcaaatcataCCATAAATCTACCCTGCTGatccctgcttacaagcaaaaactcaaaacaggaagtaccagtgatgcgctcaatacggaagtggtccgacTAAGCGgatactaagctacaggactgttttgctggcACAGTGGAatgtgttccgggattcatccgataacattgaggaatttaccacatcagtcaccggctttatTAAAAAGTACATTGACAATGTTGTTCCCACAGTGACAGCACGTACATCCCCCAACCacaagtcatggattacaggctccctggcatccaggacctctataccaggcggtgtcagagaaaggccccaaaaattatcaaacactccagccacccaagccatagactattctctctgctaccttaCGGCTAGTgataccagtgcaccaagtctggaatcaacaggaccctgaacagcttttatccgaaagccataagactgataaacaACTGGTTTagagctaatcaaatggctatccagacCTGCATTGACAAAACGCATACACATGCATAATGACGCCACAAATACACACAgctgctactgtctatctatcctgttgccttgtcactttacctatacagtgctttcagaaagtattcacaccccttgacattttccacaatttgttgcaTGACAGCCTgcatctaaaatggattaaattgacatttttggtCACGAACATAAACATATTTCCTCTTTGGTATTATGTGTGtcaatttttttattaaaaacttaaatatcacatttacataaatattaatatcctttacacagtactttgttgatgcacctttggcagcaattacagccttgagtcttcttgggtatgacgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2462638 lncRNA upstream 35044 13191072 ~ 13191363 (+) True G2153767
TU2462434 lncRNA upstream 44889 13181087 ~ 13181518 (+) True G2153583
TU2462433 lncRNA upstream 56277 13169587 ~ 13170130 (+) True G2153582
TU2462431 lncRNA upstream 58309 13167486 ~ 13168098 (+) False G2153582
TU2462398 lncRNA upstream 59001 13166427 ~ 13167406 (+) True G2153550
TU2462796 lncRNA downstream 252817 13483138 ~ 13493716 (+) True LOC110509670
TU2462873 lncRNA downstream 365314 13595635 ~ 13596456 (+) True G2153986
TU2462897 lncRNA downstream 405482 13635803 ~ 13636156 (+) True G2154008
TU2463202 lncRNA downstream 439460 13669781 ~ 13670032 (+) True G2154296
TU2463205 lncRNA downstream 441729 13672050 ~ 13672876 (+) True G2154299
XM_021590677.2 mRNA upstream 138236 13018053 ~ 13088171 (+) False LOC110509661
XM_021590678.2 mRNA upstream 138236 13018054 ~ 13088171 (+) True LOC110509661
XR_002471458.2 mRNA upstream 781086 12438582 ~ 12445321 (+) True LOC110509656
XM_036967965.1 mRNA upstream 831839 12377064 ~ 12394568 (+) True atp6v1b2
XM_021590667.2 mRNA upstream 854060 12365542 ~ 12372347 (+) False dusp11
XM_021590681.2 mRNA downstream 4150 13234471 ~ 13259942 (+) True arsb
XM_021590682.2 mRNA downstream 32345 13262666 ~ 13336582 (+) False LOC110509667
XM_021590684.2 mRNA downstream 32345 13262666 ~ 13336582 (+) True LOC110509667
XM_036967340.1 mRNA downstream 146981 13377302 ~ 13442767 (+) True LOC110509669
XM_021590687.2 mRNA downstream 252785 13483106 ~ 13493733 (+) False LOC110509670
TU2462149 other upstream 465917 12759880 ~ 12760490 (+) True G2153316
TU2461440 other upstream 918969 12300792 ~ 12307438 (+) True G2152639
TU2460909 other upstream 1460056 11764224 ~ 11766351 (+) True G2152150
TU2460223 other upstream 1859915 11360385 ~ 11366492 (+) True G2151555
TU2459342 other upstream 2764187 10461753 ~ 10462220 (+) True G2150729
TU2463200 other downstream 437968 13668289 ~ 13669170 (+) True G2154294
TU2463318 other downstream 542387 13772708 ~ 13774088 (+) False G2154391
TU2463316 other downstream 543426 13773747 ~ 13776134 (+) True G2154391
TU2463371 other downstream 575692 13806013 ~ 13813970 (+) True G2154438
TU2463446 other downstream 702927 13933248 ~ 13935819 (+) True G2154512

Expression Profile